Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2057 102 2e-16 >seq2057 Length=81121 Score = 102 bits (112), Expect = 2e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| ||||| |||||||| ||||| |||||| ||||| |||| | | || Sbjct 3437 CTCACTCCCGCATGCGCGGTCTGTCTGGTGGCCAGCGTGTCAAGACTGTCCTGGCTGCTT 3496 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| || Sbjct 3497 GCTCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGT 3555 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || ||||| |||||| Sbjct 3556 GACTCTCTGGGTGCTCTG 3573 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || || || || || |||| |||||| || || || |||| ||||||||||| ||| Sbjct 2035 GGCGAAGACCTTTGCAACTGCACTTTCTCTCTTGCCTACGGTGCCAAGATTCTGCTCAAC 2094 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | |||||||||| | || || ||||| ||||||||| || | Sbjct 2095 CAAACCCATCTCCGCCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 2154 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 |||||| |||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 2155 GGTAAGTCCACTCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 2213 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 2214 GAGCGAGGTCAAGACTGTCTTCGTTGAGCACGACCTTGACTCCGCT 2259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027805786630555