Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq535 196 9e-45 seq1790 179 7e-40 seq1667 161 2e-34 seq2057 102 2e-16 >seq535 Length=62126 Score = 196 bits (216), Expect = 9e-45 Identities = 576/876 (66%), Gaps = 29/876 (3%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || | || || |||||||||||||| |||||| Sbjct 14785 TTCATGACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCA 14844 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGG 10048 |||| |||||| ||||||||||||||||||||| | | | | || ||| Sbjct 14845 CCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTG--GAAGACTTGTAGAC--CTTTTC 14900 Query 10049 GTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTC 10108 || ||||| || | | |||||| || || ||||| |||||||| |||||||| Sbjct 14901 GTTGCCGAGAGCGACCAGCAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGCT 14960 Query 10109 CGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGC 10168 ||||||||||||| || | |||||||| || ||| | ||| |||| || | Sbjct 14961 GGAGTTCATGCCAAGCAAGGCGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCG 15020 Query 10169 GACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGG--GACAGCTTGTTCTCGAGCTTC 10226 ||| || || || |||| | || || | | || ||||| ||| | Sbjct 15021 GACAGCGTCGGTGATGATGTCACGGATCATCTCCTTGCTGGCACG--GTTCTTGAGGTGA 15078 Query 10227 GAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 || | ||| || |||| | ||| || ||||| || || ||||| ||||||| Sbjct 15079 GAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCATCACGAGAGATGAGCTCGTTG 15138 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || || |||||| |||||||| || || || | |||||| |||| | || | Sbjct 15139 GAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCA 15198 Query 10347 CCGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-G 10403 ||| ||| ||||| ||||| ||| | |||| || ||||||| || ||||| | Sbjct 15199 CCGCTGAA--GAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAG 15256 Query 10404 CGGTCGCG--CGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCG 10461 | || | | || | || |||||| | ||||| || | | | ||| || | Sbjct 15257 AGTTCTTGTCCTGAATCCACTTGATGGCCCAGTCGGCCTTTTTGCGAATGCAAGGAATGG 15316 Query 10462 TCTCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGA 10521 |||| || || | |||||| | | | |||| | | | |||| || | || | || Sbjct 15317 TCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGA 15376 Query 10522 GCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATA 10580 |||||||||| |||| ||||| | |||| | |||| | ||||||| ||| Sbjct 15377 GCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAT- 15435 Query 10581 CGTGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATG 10640 || ||| |||| | ||| || || ||| | | ||||||||| | || ||| Sbjct 15436 CGAGCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATG 15495 Query 10641 CCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTC 10700 ||||| | | ||||||||| | |||||||| |||||||| ||| ||||||||| Sbjct 15496 CCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTC 15555 Query 10701 A----GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCA 10756 | ||| || |||||| || ||||| | || | | ||| || ||||||| Sbjct 15556 AGGCGGTTGTT----CCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 15611 Query 10757 GAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAAT 10792 ||| | ||| ||||||| |||||||| || |||| Sbjct 15612 GAAGGAGGCCTCGGCCTTTTTGTACATTTGCCAAAT 15647 >seq1790 Length=95376 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || || ||||| || |||||||| || |||||| Sbjct 27668 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 27727 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | || || ||||| || ||| Sbjct 27728 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 27787 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 27788 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 27847 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 27848 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 27894 >seq1667 Length=31153 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||| ||| || || ||||| || |||||||| || ||||| Sbjct 22712 CCACCACGAAGGCGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 22653 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || || || || || | || ||||| || ||| Sbjct 22652 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGAGGA 22593 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| |||||||| || | || || || Sbjct 22592 ATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTATCGGACGACTCCACC 22533 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| || ||||| Sbjct 22532 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 22486 Score = 158 bits (174), Expect = 2e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | || || ||||| || | |||||||| |||||| ||| || |||||||| | Sbjct 23475 TTTACTGGCCACCACGAAGACGAAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGT 23416 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | ||| | || | || ||||| | |||||| || || || || | | || |||| Sbjct 23415 AGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGT 23356 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || |||||||| |||||||| |||||||| | ||||||| ||||||||||| | | Sbjct 23355 CAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAG 23296 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || | |||||| || || || ||||| ||||||||||| |||||||| Sbjct 23295 ATTCCACCTCGAGGGTGATTGTCTTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || |||||||| || || ||||| || |||||| Sbjct 23011 CCACCACGGAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 22952 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | | || ||||| || || Sbjct 22951 AGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGG 22892 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| || ||||| || | ||| || || Sbjct 22891 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCAGATGACTCCACC 22832 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||||||| ||||| |||||||||||||||| Sbjct 22831 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGA 22795 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || ||| ||| ||||| ||||| || ||| Sbjct 23239 CCACCACGCAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTTTGAATGTTGTAGTCGCTC 23180 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || || || ||||| | || || || || || Sbjct 23179 AAAGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCCGGGGGG 23120 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||||| |||||| ||||||||||||| ||| || || Sbjct 23119 ATACCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGACTCAACC 23060 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || || | ||||||||||| |||||||| Sbjct 23059 TCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 23013 >seq2057 Length=81121 Score = 102 bits (112), Expect = 2e-16 Identities = 666/1050 (63%), Gaps = 68/1050 (6%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| |||| |||||||| ||||| ||| || || Sbjct 3044 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCAAGGTGGTTATCAATGTGGGCAAAGGCG 2985 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 2984 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCGCCACCGGTGGGG 2925 Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || ||| ||| || ||||| || |||| |||||| ||||| ||||| || || Sbjct 2924 ATGAGC-TCACCGCAGAGAACGTTGATCAGAGTAGACTTGCCAGCACCGTTGGGACCGAT 2866 Query 225160 CACGCCAATCCGGGAT------GA-CATTGCAACCTGCGAGTTCACGTTGCTGAAGATCT 225212 ||| |||| || || || || || || ||| | || | ||| | | | Sbjct 2865 AACGGCAATACGAGAGCCAAGAGAGCACTGGAAGCTG--ATCTCCTGGATCTGGGGCTTT 2808 Query 225213 CAGGGCCAGTTTGGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGT 225266 ||| | | |||| |||| || | ||||||| |||||| | Sbjct 2807 GAGGTACCGG--GGTACTGGAAGGACATCTTGGTGGCACGCAG------GATGGCCTTGG 2756 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326 |||||| | | |||||| ||||| |||||||||||||| ||| || | | | Sbjct 2755 CCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGGAGAACTCCATCTCGGAGG 2696 Query 225327 CCTTCAGGTCGTAGTAAGATGCAGCCTCGGGT---CGCTTTGCCACGAAAGCAGACAGGT 225383 | || |||||||| || || || ||||| ||||| | ||||| Sbjct 2695 CACCGAGTTCGTAGTAGGACTTGGCGGAAGGAACACGCTTG---ACGAACTCCTTCAGGT 2639 Query 225384 TTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACT 225442 | || ||| | | ||||||| || |||||| || || || ||| | ||| || Sbjct 2638 TACCACGGTAACGCTTAAGCTTGAA--TCG-CTCGTAGTGGACGATGTGCTG-GCAGACG 2583 Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTT 225501 ||||||||||| |||||||| || || |||||||| | || | | || || | Sbjct 2582 TTGTCAAGGAAGCTGGAGTCGTGAGAGACGATGATGGAAGTGCAAG---GGGAG-CCGGT 2527 Query 225502 GAGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCA 225560 ||||| || | |||||| ||||| | ||||||| |||||| ||||| ||||| | Sbjct 2526 GAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTAGTAGGCTCGTCGA 2468 Query 225561 GAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGC 225620 | ||||| || |||| | | || || || || |||| |||||||| ||||| | Sbjct 2467 GCAGCAGAATATCAGGAGCCTCGAAGACAGCACGGCACAGAGCGAGCTTCATCTTCCAAC 2408 Query 225621 CCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTC---CA 225677 | |||||||||| | || | | | | ||| |||||| |||| || Sbjct 2407 CACCGGACAGGGCGGAAATCTCGCCCTGGACCATCTGCTCGGTGAAGCCGAACTCGTCCA 2348 Query 225678 GGAGCGTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGA 225737 || || ||| || | | || | |||| || | || |||| |||| | || Sbjct 2347 GGCGCTTCTCGACA-TCAGCCTGAGAGA--------CGTCGACCTTGGCCTCGG-CAAGC 2298 Query 225738 --------GGT--AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCC 225787 ||| | || |||||| || | ||| | ||||| |||||| || Sbjct 2297 TTCTTCATGGTCCAGTCGATGGTGGTCATCTCAGTATCAGCGGAGTCAAGGTCGTGCTCA 2238 Query 225788 ACGTACACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAAT 225846 ||| | || ||| || || | || | |||||| ||||| | ||| | || || Sbjct 2237 ACGAAGACAGTCTTGACCTCGCTCTGCTT-GGGGAAACCCTCGACCTGCTCGTTGTTGAT 2179 Query 225847 CGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCC 225906 ||||| | || || ||| || | |||||||||||| || |||||| | | || Sbjct 2178 GGCACGCATGAGAGTGGACTTACCGGAACCGTTGGGACCGCAAAGACCGTAACGCTGACC 2119 Query 225907 GCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAA 225966 ||||||| | ||| | || ||| || || |||||| |||| |||||||| ||||| Sbjct 2118 ACGCTTGAGGCGGAGATGGGTTTGGTTGAGCAGAATCTTGGCACCGTAGGCAAGAGAGAA 2059 Query 225967 CTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 ||| | ||| ||||| || |||||||| Sbjct 2058 AGTGCAGTTGCAAAGGTCTTCGCCCTCCTC 2029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921595269740600