Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq535 401 1e-106 seq1903 372 6e-98 >seq535 Length=62126 Score = 401 bits (444), Expect = 1e-106 Identities = 608/852 (71%), Gaps = 30/852 (4%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||| ||||| || |||| |||||||||||| |||||||| ||| ||||||| Sbjct 15638 ATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTGTCCAAGGAT 15579 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAAAACATACT 42424 | || |||| | || | |||| || |||| |||| ||| || |||| || Sbjct 15578 CTGCACGACTGGAACA-ACCGCCTGAACGATGACGAGAAGTACTTCATCTCTCACATCCT 15520 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 ||||||||| ||||||||||| ||||| ||||| |||||||||| | | |||| Sbjct 15519 GGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCGCTTCAGCGG 15460 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||| ||| | ||||| || |||||||||||||||||||| || |||||| | Sbjct 15459 CGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACAT 15400 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCG 42601 ||||| ||| ||| || ||||||| |||| |||||| ||| | | |||| Sbjct 15399 CCACTCCGAGACCTACTCC---CTGCTCATCGACACCTACATCAAGGAGAACAGCCAGCG 15343 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 | | || ||||| ||||| ||||| || || ||||| || ||||| |||||||| Sbjct 15342 CAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAAAAGGCCGACTGGGC 15283 Query 42662 GCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 |||| ||||| || | | | || | | || | | || | ||||| |||||| ||| Sbjct 15282 CATCAAGTGGATTCAG-GACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCG 15224 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAG 42779 |||||||||||||||||||| || ||||| ||||||||||||||| ||||| || || Sbjct 15223 CCGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGGTCAAGAAGCGAG 15164 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 || || ||||| || || ||||| || ||||| |||||| | || ||||| ||||| Sbjct 15163 GTCTC-ATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGATGAGGGTCTGCAC 15105 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899 | |||||||||||||| ||| ||| ||||||| | || || |||||| | Sbjct 15104 ACTGACTTTGCCTGCCTGCTGCACTC---TCACCTCAAGAACCGTGCCAGCAAGGAGATG 15048 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTG 42959 |||| | ||||||||| || || || || ||| |||||||| | || || | || Sbjct 15047 ATCCGTGACATCATCACCGACGCTGTCCGAATTGAGCAGGAGTTCTTGACCGAGGCTCTC 14988 Query 42960 CCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019 ||| || || | ||||||||| | ||| ||| ||||||| ||| || ||| Sbjct 14987 CCCTGCGCCTTGCTTGGCATGAACTCCAGCCTGATGAAGCAGTACATTGAGTTTGTTGCC 14928 Query 43020 GACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACACGCCGTGCCCC 43073 ||| | |||| | | | | |||| || || ||||||| | | |||| Sbjct 14927 GAC---CGCCTG---CTGGTCGCTCTCGGCAACGAAAAGGTCTACAAGTCTTCCAACCCC 14874 Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133 || ||||| ||||||||||| || | | |||||||||||||| ||||||||||||||| Sbjct 14873 TTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTC 14814 Query 43134 GCCGACTACCAG 43145 |||||||||||| Sbjct 14813 GCCGACTACCAG 14802 >seq1903 Length=20131 Score = 372 bits (412), Expect = 6e-98 Identities = 1120/1712 (65%), Gaps = 54/1712 (3%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||| || | ||| || | ||||||| || | |||||||||||||||||||||| Sbjct 3799 ACGGTGAATTGAATGGGAGCAGCTGCGGCCTGAGTGCGCAGGTAGTACATGCCGGTCTTG 3858 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || ||| |||| | || ||||||| || | ||| ||| | |||| Sbjct 3859 AGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCAT-------TGTGGG 3911 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||||| || || ||| ||||||||| |||||| | ||| | | || || Sbjct 3912 --GTCCTT---CATGTGGATGTTCAGGGACTGGGACTGGTCAATGAAAGCACCACGATCA 3966 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 || ||||| || | | |||||| ||||| || | |||||||| | || |||| Sbjct 3967 GCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCACACGGTCTTGTACAAGGCCTTG 4026 Query 243977 AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTG 244036 | | ||||||| ||||||||| | ||||| || | | |||| || | Sbjct 4027 ATATCTTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTC 4086 Query 244037 CGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTT 244092 |||| |||| ||| ||||| | |||| ||| || ||||| | || Sbjct 4087 TTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGG----TT 4142 Query 244093 CACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTC 244152 || ||||| ||||| || | || || || |||||||||| |||| || ||||| Sbjct 4143 GACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTC 4202 Query 244153 GATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAG 244212 || || ||| |||||||||| ||||| | || || ||||| |||||||| | || || Sbjct 4203 GAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTGGGCATGGGGGCGACGAG 4262 Query 244213 CAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACAT 244272 || ||||| | ||| |||||| || ||| | ||||| || ||| ||||||| Sbjct 4263 CAAGCTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAA 4322 Query 244273 GCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC-TGA 244331 | | || ||| |||| |||||||||| || || || | |||| | || Sbjct 4323 GTCAGA-AGGC--------TTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGC 4373 Query 244332 CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGT 244391 || | | |||| | | | ||||||||| || || ||| | || | | | Sbjct 4374 AGGTGAT-CCCTTGAACGATTCGTAGGGACCCTCCACCTTGGCAATCTCCATGGAAGCCT 4432 Query 244392 CGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGC 244451 | ||||| |||| |||||| ||||| |||||| |||||||| ||||| |||| | Sbjct 4433 CCAGGGCCGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAG 4492 Query 244452 AGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGA 244511 | ||||| |||| || | ||| ||||||| || ||||| || || | || | Sbjct 4493 ACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAA 4552 Query 244512 TGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 | |||| ||| ||| ||||| | || | || | || || || || ||||| | || Sbjct 4553 TAGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGG-ACAGGATAGTAGTTGACATCA 4611 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCG 244630 || | |||||| ||||||||| | | | ||| || ||| || ||||||| Sbjct 4612 ATGATCTTGTTAAGGTTGCGGACAACGACCTTGGTGACTTCATGAAGCTTCTTAAAGTCG 4671 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 || | | ||| | | || || | || | | |||||| | |||| Sbjct 4672 TA-------GCAGCCTTCG---TTGTAGTCGACGTAAGCAGG--GAGGGCCAAAGAGGCC 4719 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 | |||||| ||||| ||||| || | | ||||| || ||||||||||||||||| Sbjct 4720 AAGTTGCACACGGCAACCTCATCTGGGGCACAGTACTCGATGATCTCGGTGCAGAGGTTG 4779 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 || |||||| ||||||| || || ||| |||| ||||||| ||||||||| Sbjct 4780 GAGCTGCGGATGGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAG 4839 Query 244811 AGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTA 244870 ||||||||||| || |||||| |||||| | |||| | | ||| || | | | Sbjct 4840 AGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGA 4899 Query 244871 GCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAAC 244930 || || ||| ||||| | ||||| |||||| |||| |||||||||| Sbjct 4900 GCGCGGATGGTCTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATACAAGGCCTCGAAC 4959 Query 244931 TCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCCACT 244988 || ||| || || | ||||| || || || | ||||||||||| |||| | Sbjct 4960 TCCTCGCCATAGCAGTCAGCAAGGCCAGGACATTCGTTG--GGGCACATGAGCGTCCAGT 5017 Query 244989 CGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGT 245048 | | | || || | || ||||||||||||||| |||||||| || |||| | || Sbjct 5018 CCAAGTTCTTCTCAACACGCTTCATGAAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGT 5077 Query 245049 CCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGT 245108 | | | | ||| ||| ||| |||||| | || || | || |||||||||| Sbjct 5078 CGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGT 5137 Query 245109 CGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGT 245168 || ||||||||||||| | ||||| || | || || || |||||||| || ||||| | Sbjct 5138 CGGCGTGCCAGGGCTCGAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGAT 5197 Query 245169 CCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTG 245226 | | ||| ||| | || | |||||| | || || | || | || ||||| ||| Sbjct 5198 CGA-CAT-ATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGAGGT 5255 Query 245227 GCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAG 245286 ||||||||||| ||||| | ||| || | | || | | || | || ||| | Sbjct 5256 ACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGAT 5315 Query 245287 TCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCAT 245346 || || || ||||| || | ||| || |||| | |||||| || ||||| || Sbjct 5316 ACCACCAGCCATTTTGGAAATCATGGCACATGTCTTCAGGGTGTCATAGATACCCTCGAT 5375 Query 245347 GCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGA 245406 || || |||||||| || || ||||| ||||||||||||| || ||| | | | Sbjct 5376 ACTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACCGGC 5435 Query 245407 GTTGAACA-GAGTGGGGCTGGCGTGGGTAAAG 245437 |||||||| | |||||| ||| ||||| ||| Sbjct 5436 GTTGAACAGGGGTGGGGGAGGCATGGGTGAAG 5467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944311401014800