Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1667 84.2 2e-11 >seq1667 Length=31153 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||| || ||||||||||||||||| |||||||| || ||| || Sbjct 23458 AGACGAAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGA 23399 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||| || ||||| |||| ||||||||| || || | || ||| Sbjct 23398 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCC 23339 Query 34030 TTGTCCATAATTTT 34043 |||||| ||| || Sbjct 23338 TTGTCCTGAATCTT 23325 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || ||||| ||||||||||| ||||||||||| || Sbjct 23240 ACCACCACGCAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTTTGAATGTTGTAGTCGCT 23181 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || |||| || | ||||| || ||||| || || |||||||||||| || Sbjct 23180 CAAAGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCCGGGGG 23121 Query 34020 CACGCTCTCTTTGTCCATAATTTTT 34044 | | ||| |||||| ||| ||| Sbjct 23120 GATACCCTCCTTGTCCTGAATCTTT 23096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397051003688710