Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1667 122 2e-22 seq1790 104 6e-17 >seq1667 Length=31153 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | ||| || | || | |||||| || || ||||| || |||||| Sbjct 23470 TGGCCACCACGAAGACGAAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCG 23411 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||| |||||||| | || || || || ||||||| ||||| || | Sbjct 23410 CTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGA 23351 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||| || || | || ||||| || || | ||| ||||| Sbjct 23350 GGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCC 23291 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || || |||||||||||||| |||||||| Sbjct 23290 ACCTCGAGGGTGATTGTCTTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || || || || || || | ||| || || || || Sbjct 22676 TCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCAAAA 22617 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | || || || || || |||||||| || | || ||||| Sbjct 22616 ATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTG 22557 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| ||| || || ||||| ||||| ||||| ||||| || ||||||||| Sbjct 22556 TCGATGGTATCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 22497 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 22496 AAGATTTGCAT 22486 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| ||||| || ||||| || || |||||| Sbjct 23239 CCACCACGCAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTTTGAATGTTGTAGTCGCTC 23180 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| ||||| || | || || || || ||||| |||||||| ||| ||| Sbjct 23179 AAAGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCCGGGGGG 23120 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | || || || || || | || || || || Sbjct 23119 ATACCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGACTCAACC 23060 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||||| ||||||||||| |||||||| Sbjct 23059 TCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 23013 >seq1790 Length=95376 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| || || || || || | || || || |||||| Sbjct 27704 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAG 27763 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || || ||| || || || || |||||||| || | || || Sbjct 27764 ATCAATCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 27820 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || || || || |||||||||||||| || || |||||| Sbjct 27821 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 27880 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 27881 ACGAAAATCTGCAT 27894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179618805771690