Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq535 102 2e-16 >seq535 Length=62126 Score = 102 bits (112), Expect = 2e-16 Identities = 177/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || || || |||| ||| | ||| ||| | || ||| | Sbjct 15038 ATCATCACCGACGCTGTCCGAATTGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGC-GC 14980 Query 243562 CTTA-TTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| ||||||||||||| || ||| |||||||| || || || ||||||||| | Sbjct 14979 CTTGCTTGGCATGAACTCCAGCCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCT 14920 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 | |||| || || | || || || ||||| || |||||||||| ||| ||||| Sbjct 14919 GCTGGTCGCTCTCGGCAACGAAAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGA 14860 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACG 243740 | |||||| || || || || ||||||||||| ||||| ||| || || || Sbjct 14859 GAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCCGACTACCAGAA 14800 Query 243741 CCCTGGTGTGATGAA 243755 ||||||| ||||| Sbjct 14799 GGCTGGTGTCATGAA 14785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102846722319250