Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1903 338 6e-88 >seq1903 Length=20131 Score = 338 bits (374), Expect = 6e-88 Identities = 1099/1678 (65%), Gaps = 49/1678 (3%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| ||||||||| ||| ||||| || ||| | |||||| Sbjct 5634 AACTACCAATACTTTGGCTTCAAGACTCTGGAGCGGTCATACCTTCTGAAGCTTGATGGC 5575 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| || || || || | ||||| || | | || || || || Sbjct 5574 AAGATTGTTGAGCGGCCACAGCACATGATTATGCGGGTGTCTGTTGGCATCTGGGGAGAC 5515 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| | ||| || | | | || |||| |||| | ||| ||| Sbjct 5514 GACATTGAGCGTGTCCTGGAGACATACAACCTCATGTCTAGCAAGTTCTTCACCCATGCC 5455 Query 93895 ACCCCGACCC-TGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 |||| |||| |||||||||| || |||||| | | ||| |||| || || ||| || | Sbjct 5454 TCCCCCACCCCTGTTCAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGT 5395 Query 93954 -GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCA 94012 ||| | |||| ||| ||| || || | |||| ||| ||| ||||| | | Sbjct 5394 CGAC-ATGAAGGACGATAGTATCGAGGGTATCTATGACACCCTGAAGACATGTGCCATGA 5336 Query 94013 TCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCT 94072 | || ||| || || || ||||| | | |||||| | | ||||||| || || | Sbjct 5335 TTTCCAAAATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTT 5276 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 |||| || ||||| || ||||||||||| | | || ||||| || || ||||||| Sbjct 5275 ACATTGCTGGCACCAACGGTACCTCCAACGGTATTATTCCCATGCTTCGAGTGTTCAACA 5216 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || | || | || || || ||||||||| | | | ||| |||| || |||| | Sbjct 5215 ACACTGCCAGATATGTCGATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACC 5156 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 |||||||||||||||| ||||| | ||| | || || || |||||||||||||| | Sbjct 5155 TCGAGCCCTGGCACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGG 5096 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | || | || | ||| | ||| ||||||||| | || ||||| || ||||| | Sbjct 5095 AAGAGGTCCGCGCTCGCGACTTGTTCCTTGCTCTCTGGATTCCCGACCTCTTCATGAAGC 5036 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | || ||||| |||| | ||||| || | || ||||| |||||||| || || | | Sbjct 5035 GTGTTGAGAAGAACTTGGACTGGACGCTCATGTGCCCCAACGAATGTCCTGGCCTTGCTG 4976 Query 94373 ACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCC 94431 || | ||| | || || | |||||||| ||||| | |||| | || | Sbjct 4975 ACTGCTATGGCGAGGAGTTCGAGGCCTTGTATGAGAAGTACGAGAAGGAGGGACGTGGTC 4916 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | ||| || ||| |||||||||| || ||| |||| | ||| ||||| Sbjct 4915 -GCAAGACCATCCGCGCTCAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACT 4857 Query 94492 GGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 |||| |||| ||| | | |||||| | ||| |||| |||| |||||| || |||| Sbjct 4856 GGTAACCCCTTCATGCTCTACAAGGATCACTG-CAACCGCAAGAGCAACCAAAAGAACCT 4798 Query 94551 CGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGA 94610 || ||| ||||| || || ||||||||||| ||||||| | | || || || Sbjct 4797 GGGAACCATCCGCAGCTCCAACCTCTGCACCGAGATCATCGAGTACTGTGCCCCAGATGA 4738 Query 94611 GATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACAC 94670 | |||| ||||| ||| ||| ||| | ||| | ||| ||| ||| ||||| Sbjct 4737 GGTTGCCGTGTGCAACTTGGCCTCTTTGGCCCTCCCTGCTTACGT-CGA-----CTACA- 4685 Query 94671 GTCTACTGCTTCGTTCGATCTGGAGGAGCTT-GTGAACTTCGCGGGAAGG--ATGGTCTT 94727 | | ||| | | ||| | || ||||| |||| | | |||| | ||| Sbjct 4684 -ACGAAGGCTGC-TACGACTTTAAGAAGCTTCATGAAGT---CACCAAGGTCGTTGTCCG 4630 Query 94728 GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAA 94787 ||||| |||| | | || || |||| ||| || |||| |||||| ||| || Sbjct 4629 CAACCTTAACAAGATCATTGATGTCAACTACTATCCTGTCCAGGAGGCTCGCAACAGCAA 4570 Query 94788 CCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847 | || || || || || || | || ||||||||| | || ||||| | | | Sbjct 4569 CATGCGCCACCGACCTATTGGTGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCCCT 4510 Query 94848 GCGTCTGCCCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 ||| |||||| || ||| ||| || ||| | |||| | | || || || | | Sbjct 4509 GCGCATGCCCTTTGAGTCTCCCGAGGCTCGCGAG-CTGAACAAGCAGATCTTTGAGACAA 4451 Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACG 94966 | || ||| |||| || | ||| | | | |||| || | || || ||| Sbjct 4450 TCTACCACGCGGCCCTGGAGGCTTCCATGGAGATTGCCA---AGGTGGAGGGTCCCTACG 4394 Query 94967 AATCGTTCCGCGGATCGCCCTTGGAAC--AGGGCATTTTTCAGTTCGACCTCTGGGGTGT 95024 |||||||| ||||| || || | | ||||||| | || |||||| | |||| ||| Sbjct 4393 AATCGTTCAAGGGATCACC--TGCATCCGAGGGCATCCTCCAATTCGACATGTGGGATGT 4336 Query 95025 GAAGCCCTCGGGTCTGTACGACTGGGA--AGCTCTACGCGCTGATGTTATCAAACACGGT 95082 ||||| || | ||| || ||||| |||| | | || || | | | |||||| Sbjct 4335 CAAGCCTTCTGACTTGTGGGAGTGGGACTCGCTCAAGGAGCAGA--TCAAGGAGCACGGT 4278 Query 95083 GTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGC 95142 ||| ||| |||| || |||||||||||||| ||| || | ||||| || ||| Sbjct 4277 GTGCGCAACAGCTTGCTCGTCGCCCCCATGCCCACTGCCAGTACCTCCCAGATTCTGGGC 4218 Query 95143 AACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGG 95202 |||||||||| ||||| |||| ||| |||||| | ||| | | || || || ||||| Sbjct 4217 AACAACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGC 4158 Query 95203 GAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGG-GTGT-GTGG 95259 || |||| || ||||| || || |||||| | || | | || | | || Sbjct 4157 GAGTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACCGGCCTCTGGTCC 4098 Query 95260 GGTGACAAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCC 95315 | || || | ||||||| | |||| | ||||||||| | ||||||||||| Sbjct 4097 GATGCCA---TGAAGAACCGTATCATTGCT----GAGAACGGCTCCATTCAGAACATCCC 4045 Query 95316 GCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 | || || || || |||||||| | |||||||||||||||||||| | |||||| Sbjct 4044 CAACATCCCCGAAGATATCAAGGCCTTGTACAAGACCGTGTGGGAGATTTCTCAGCGC 3987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494708636585800