Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq535 188 7e-43
seq1903 141 9e-29
seq1667 123 2e-23
seq1790 93.3 4e-14
>seq535
Length=62126
Score = 188 bits (208), Expect = 7e-43
Identities = 509/766 (66%), Gaps = 31/766 (4%)
Strand=Plus/Minus
Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145
|||||||||||| || || ||| ||| | |||| ||||| |||||| | ||| ||
Sbjct 15554 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGC 15495
Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTC-GAGGCGCA 52204
|| || ||| ||||| ||||| | | |||||| | ||| || | | ||||| |
Sbjct 15494 ATTGTCAACGAGAACCTGGTCGAGCGCTT-CAGCGGCGAGGTCCAGATCCCCGAGGCTCG 15436
Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264
|| ||| || || || | | || ||| | | ||| | |||| ||| |||||
Sbjct 15435 ATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCT 15376
Query 52265 CATTGAGCAGCTG-ATAAAAGATGAGCA-CGAGCGCGACACGCTGCTGAATGCGTTCGAG 52322
||| || || || || || || || || | ||||| | || | || || | |||
Sbjct 15375 CATCGA-CACCTACATCAAGGA-GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAG 15318
Query 52323 CACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACC 52382
| | || ||| ||||||||||||| | ||||| || |||||||| || | | | |
Sbjct 15317 ACCATTCCTTGCATTCGCAAAAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGAAC 15258
Query 52383 GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442
| | | ||| ||||| |||| ||||| ||| ||||||||| | || || |||
Sbjct 15257 TCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGT 15198
Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502
||||||| ||||||| | | || | | ||| | ||||| || ||||| || |
Sbjct 15197 GCCTTTGCCTCCATCTTCTGGGTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCC 15138
Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CT------- 52554
|||||| | || || || || || || |||||||| |||||||| ||||| ||
Sbjct 15137 AACGAGCTCATCTCTCGTGATGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCT 15078
Query 52555 -ACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCAA 52612
|| ||||| |||| | | || ||| | ||||| ||| ||| |||
Sbjct 15077 CACCTCAAGA--ACCGTGCCAGCAA----------GGAGATGATCCGTGA-CATCATCAC 15031
Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672
|| || || || || ||||||| || || | || || || || |||| ||
Sbjct 15030 CGACGCTGTCCGAATTGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGCGCCTTGCTTGG 14971
Query 52673 CATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGC 52731
||||||| | ||| | ||| ||||||| |||||||| || || || ||| ||||
Sbjct 14970 CATGAACTC-CAGCCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTGCTGGTCG 14912
Query 52732 AGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTT 52791
||||| | |||| || ||| || ||| || ||||| || ||| | |||||||
Sbjct 14911 CTCTCGGCAACGAAAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATTT 14852
Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
| || | |||||||||||||| ||||||||||| |||| ||| ||
Sbjct 14851 CTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCCGACTA 14806
>seq1903
Length=20131
Score = 141 bits (156), Expect = 9e-29
Identities = 507/779 (65%), Gaps = 33/779 (4%)
Strand=Plus/Plus
Query 153390 GGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGA 153449
||||||||||| | || |||||||| |||||||||| ||| || || || |||||
Sbjct 4501 GGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATAGGTCGG 4560
Query 153450 TGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGATAATTT 153507
|| | ||||||| | || ||| || | ||||||| ||| ||| || || |
Sbjct 4561 TGGCGCATGTTGCTGTTGCGAGC-CTC-CTGGACAGGATAGTAGTTGACATCAATGATCT 4618
Query 153508 TGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAG---- 153563
|||| |||||||| || || || || || | | | ||| |||| || || |||
Sbjct 4619 TGTTAAGGTTGCGGACAACGACCTTGGTGACTTCATGAAGCTTCTTAAAGTCGTAGCAGC 4678
Query 153564 -GTCATT-TCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGG 153621
|| || | ||||| |||| ||| | | ||| | ||| |||| || || ||||
Sbjct 4679 CTTCGTTGTAGTCGA--CGTAAGCAGGG----AGGGCCAAAGAGGCCAAGTTGCACACGG 4732
Query 153622 CCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681
| ||| || | | | | ||||| | |||||||| |||||||||| || |||
Sbjct 4733 CAACCTCATCTGGGGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGG 4792
Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741
|||| || | || ||||| ||||| ||||| || ||| |||||||| | ||
Sbjct 4793 TTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGT 4852
Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGAT--AAACCTATGCAGGTCCTGCGCTCGCACCCG 153799
|| |||||| || | ||| | ||| || | | ||| | ||| || || |
Sbjct 4853 TACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCA--CAGCTTCTGAGCGCGGATGGT 4910
Query 153800 CTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTA 153859
|| ||| || ||||| ||||||| ||| |||| ||| ||||| ||||| ||
Sbjct 4911 CTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATACAAGGCCTCGAACTCCTCGCCATA 4970
Query 153860 GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA---CATATCGTCGGC 153916
|||||| || ||||| ||||| | | || ||||| |||| ||| || | || |
Sbjct 4971 GCAGTCAGCAAGGCCAGGACATTCGTTGGGGCACATGAGCGTCCAGTCCAAGT--TCTTC 5028
Query 153917 GTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTT 153976
| || || |||||| || || || | |||||| || | | |||||| ||
Sbjct 5029 -TCAACACGCTTCATGAAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCG 5087
Query 153977 GCAATCCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGGCGTGC 154034
| || ||| ||| ||| || | |||| || | | ||| ||||||||||
Sbjct 5088 GACCTCTTCCTTGCCGTGGTT--CTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGC 5145
Query 154035 CAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGG 154091
||||| || | ||||| ||| | ||||| |||| || || ||||||||||| |
Sbjct 5146 CAGGGCTCGAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATAT 5205
Query 154092 CGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150
| | | |||||||| || || | |||||| | ||| | | ||| ||||||||
Sbjct 5206 CTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGT 5264
>seq1667
Length=31153
Score = 123 bits (136), Expect = 2e-23
Identities = 146/194 (75%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||||||||||||||||||||||| ||| || ||||||||| || ||||| | | |
Sbjct 23204 CTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCGAGCTGCTTACCAGCAAA 23145
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540
||| |||||||| || ||||| || ||||| || ||||| ||| | |||| || ||
Sbjct 23144 GATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTC-CTGAATCTTTGACTTGACAT 23086
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
|| || | |||||| | ||||| ||||| | || | || || || |||| || ||
Sbjct 23085 TG-TCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTG 23027
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 23026 ACGAAGATCTGCAT 23013
Score = 105 bits (116), Expect = 7e-18
Identities = 141/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| || ||| || ||||||||||| || || | |
Sbjct 22679 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCA 22620
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
| || |||||||| ||||| ||||| || || || ||||| ||| || || |
Sbjct 22619 AAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACG 22560
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||| |||| |||||||||||||| || | || || || || || || ||
Sbjct 22559 TTGTCGATGGTATCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 22500
Query 138601 ACAAAAATCTGCATGG 138616
|| || || |||||||
Sbjct 22499 ACGAAGATTTGCATGG 22484
Score = 105 bits (116), Expect = 7e-18
Identities = 142/194 (73%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| || || ||| || || || ||||| | | |
Sbjct 23432 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAA 23373
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540
||| | ||||| ||||| ||||| || || || ||||| ||| | || | || | |
Sbjct 23372 GATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACGT 23314
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
|| || | |||||||| || |||||||||| || | || || || || ||||| ||
Sbjct 23313 TG-TCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTTGCCTGTGAGAGTCTTG 23255
Query 138601 ACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 23254 ACGAAAATCTGCAT 23241
>seq1790
Length=95376
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || | || | | | |||||||| || ||||||||||||
Sbjct 27668 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 27727
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||| || || ||||| | |||| | ||||| |||||||| ||
Sbjct 27728 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 27787
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | |||| || | |||||||| ||||||||
Sbjct 27788 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACTCCAC 27846
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | ||| || || || || || || || |||||||||||
Sbjct 27847 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 27894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496247791275600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |