Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq535 188 7e-43 seq1903 141 9e-29 seq1667 123 2e-23 seq1790 93.3 4e-14 >seq535 Length=62126 Score = 188 bits (208), Expect = 7e-43 Identities = 509/766 (66%), Gaps = 31/766 (4%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||| || || ||| ||| | |||| ||||| |||||| | ||| || Sbjct 15554 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGC 15495 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTC-GAGGCGCA 52204 || || ||| ||||| ||||| | | |||||| | ||| || | | ||||| | Sbjct 15494 ATTGTCAACGAGAACCTGGTCGAGCGCTT-CAGCGGCGAGGTCCAGATCCCCGAGGCTCG 15436 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 || ||| || || || | | || ||| | | ||| | |||| ||| ||||| Sbjct 15435 ATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCT 15376 Query 52265 CATTGAGCAGCTG-ATAAAAGATGAGCA-CGAGCGCGACACGCTGCTGAATGCGTTCGAG 52322 ||| || || || || || || || || | ||||| | || | || || | ||| Sbjct 15375 CATCGA-CACCTACATCAAGGA-GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAG 15318 Query 52323 CACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACC 52382 | | || ||| ||||||||||||| | ||||| || |||||||| || | | | | Sbjct 15317 ACCATTCCTTGCATTCGCAAAAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGAAC 15258 Query 52383 GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 | | | ||| ||||| |||| ||||| ||| ||||||||| | || || ||| Sbjct 15257 TCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGT 15198 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 ||||||| ||||||| | | || | | ||| | ||||| || ||||| || | Sbjct 15197 GCCTTTGCCTCCATCTTCTGGGTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCC 15138 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CT------- 52554 |||||| | || || || || || || |||||||| |||||||| ||||| || Sbjct 15137 AACGAGCTCATCTCTCGTGATGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCT 15078 Query 52555 -ACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCAA 52612 || ||||| |||| | | || ||| | ||||| ||| ||| ||| Sbjct 15077 CACCTCAAGA--ACCGTGCCAGCAA----------GGAGATGATCCGTGA-CATCATCAC 15031 Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672 || || || || || ||||||| || || | || || || || |||| || Sbjct 15030 CGACGCTGTCCGAATTGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGCGCCTTGCTTGG 14971 Query 52673 CATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGC 52731 ||||||| | ||| | ||| ||||||| |||||||| || || || ||| |||| Sbjct 14970 CATGAACTC-CAGCCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTGCTGGTCG 14912 Query 52732 AGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTT 52791 ||||| | |||| || ||| || ||| || ||||| || ||| | ||||||| Sbjct 14911 CTCTCGGCAACGAAAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATTT 14852 Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | || | |||||||||||||| ||||||||||| |||| ||| || Sbjct 14851 CTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCCGACTA 14806 >seq1903 Length=20131 Score = 141 bits (156), Expect = 9e-29 Identities = 507/779 (65%), Gaps = 33/779 (4%) Strand=Plus/Plus Query 153390 GGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGA 153449 ||||||||||| | || |||||||| |||||||||| ||| || || || ||||| Sbjct 4501 GGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATAGGTCGG 4560 Query 153450 TGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGATAATTT 153507 || | ||||||| | || ||| || | ||||||| ||| ||| || || | Sbjct 4561 TGGCGCATGTTGCTGTTGCGAGC-CTC-CTGGACAGGATAGTAGTTGACATCAATGATCT 4618 Query 153508 TGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAG---- 153563 |||| |||||||| || || || || || | | | ||| |||| || || ||| Sbjct 4619 TGTTAAGGTTGCGGACAACGACCTTGGTGACTTCATGAAGCTTCTTAAAGTCGTAGCAGC 4678 Query 153564 -GTCATT-TCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGG 153621 || || | ||||| |||| ||| | | ||| | ||| |||| || || |||| Sbjct 4679 CTTCGTTGTAGTCGA--CGTAAGCAGGG----AGGGCCAAAGAGGCCAAGTTGCACACGG 4732 Query 153622 CCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681 | ||| || | | | | ||||| | |||||||| |||||||||| || ||| Sbjct 4733 CAACCTCATCTGGGGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGG 4792 Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741 |||| || | || ||||| ||||| ||||| || ||| |||||||| | || Sbjct 4793 TTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGT 4852 Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGAT--AAACCTATGCAGGTCCTGCGCTCGCACCCG 153799 || |||||| || | ||| | ||| || | | ||| | ||| || || | Sbjct 4853 TACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCA--CAGCTTCTGAGCGCGGATGGT 4910 Query 153800 CTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTA 153859 || ||| || ||||| ||||||| ||| |||| ||| ||||| ||||| || Sbjct 4911 CTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATACAAGGCCTCGAACTCCTCGCCATA 4970 Query 153860 GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA---CATATCGTCGGC 153916 |||||| || ||||| ||||| | | || ||||| |||| ||| || | || | Sbjct 4971 GCAGTCAGCAAGGCCAGGACATTCGTTGGGGCACATGAGCGTCCAGTCCAAGT--TCTTC 5028 Query 153917 GTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTT 153976 | || || |||||| || || || | |||||| || | | |||||| || Sbjct 5029 -TCAACACGCTTCATGAAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCG 5087 Query 153977 GCAATCCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGGCGTGC 154034 | || ||| ||| ||| || | |||| || | | ||| |||||||||| Sbjct 5088 GACCTCTTCCTTGCCGTGGTT--CTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGC 5145 Query 154035 CAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGG 154091 ||||| || | ||||| ||| | ||||| |||| || || ||||||||||| | Sbjct 5146 CAGGGCTCGAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATAT 5205 Query 154092 CGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150 | | | |||||||| || || | |||||| | ||| | | ||| |||||||| Sbjct 5206 CTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGT 5264 >seq1667 Length=31153 Score = 123 bits (136), Expect = 2e-23 Identities = 146/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||||||||||||||||||||||| ||| || ||||||||| || ||||| | | | Sbjct 23204 CTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCGAGCTGCTTACCAGCAAA 23145 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540 ||| |||||||| || ||||| || ||||| || ||||| ||| | |||| || || Sbjct 23144 GATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTC-CTGAATCTTTGACTTGACAT 23086 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | ||||| ||||| | || | || || || |||| || || Sbjct 23085 TG-TCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTG 23027 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 23026 ACGAAGATCTGCAT 23013 Score = 105 bits (116), Expect = 7e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || ||||||||||| || || | | Sbjct 22679 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCA 22620 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || |||||||| ||||| ||||| || || || ||||| ||| || || | Sbjct 22619 AAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACG 22560 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| |||| |||||||||||||| || | || || || || || || || Sbjct 22559 TTGTCGATGGTATCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 22500 Query 138601 ACAAAAATCTGCATGG 138616 || || || ||||||| Sbjct 22499 ACGAAGATTTGCATGG 22484 Score = 105 bits (116), Expect = 7e-18 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || ||| || || || ||||| | | | Sbjct 23432 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAA 23373 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| | ||||| ||||| ||||| || || || ||||| ||| | || | || | | Sbjct 23372 GATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACGT 23314 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||||| || |||||||||| || | || || || || ||||| || Sbjct 23313 TG-TCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTTGCCTGTGAGAGTCTTG 23255 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 23254 ACGAAAATCTGCAT 23241 >seq1790 Length=95376 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || |||||||||||| Sbjct 27668 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 27727 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || ||||| | |||| | ||||| |||||||| || Sbjct 27728 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 27787 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||||| |||||||| Sbjct 27788 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACTCCAC 27846 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| || || || || || || || ||||||||||| Sbjct 27847 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 27894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496247791275600