Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1903 140 3e-28
seq1667 134 1e-26
seq1790 127 2e-24
seq2135 95.1 1e-14
>seq1903
Length=20131
Score = 140 bits (154), Expect = 3e-28
Identities = 640/993 (64%), Gaps = 39/993 (4%)
Strand=Plus/Plus
Query 146037 GTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCG 146096
||| || ||| |||||| || | ||||||| ||||| ||||||||||| || || ||
Sbjct 4113 GTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACG 4172
Query 146097 CCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGC 146156
| | | || | |||| ||| | |||||||| |||||||||| || || ||||| |
Sbjct 4173 TCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGA 4232
Query 146157 CGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAA 146215
|| | || || |||||| || || ||||| ||| | ||| ||||| || ||| |
Sbjct 4233 GGTACTGGCAGTGGGCATGGGGGCGACGAGCAAGCTGTTGCGCACACCGTGCTCCTTG-A 4291
Query 146216 TCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGT 146275
||| ||| || | ||| | |||||| || | || | || || | |||
Sbjct 4292 TCTGCTCCTTGAGCGAGTCCCACTCCCACAA---GTCAGAAGGCTTGACATCCCACATGT 4348
Query 146276 CGTAATGCATAGTG-CCGCGGA-ACAGGGGGCTAT-TCTCGTACGATTCATAAGGACCGT 146332
|| | || | || || |||| |||| | || || | ||||||| || ||||| |
Sbjct 4349 CGAATTGGAGGATGCCCTCGGATGCAGGTG---ATCCCTTGAACGATTCGTAGGGACCCT 4405
Query 146333 CGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCA 146392
| | |||||| | || | ||| ||||| |||| ||| || ||||| ||||
Sbjct 4406 CCACCTTGGCAATCTCCATGGAAGCCTCCAGGGCCGCGTGGTAGATTGTCTCAAAGATCT 4465
Query 146393 TGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACA---AAG 146448
| ||| | |||| | ||||| || |||| || | | || || ||
Sbjct 4466 GCTTGTTCA-GCTCGCGAGCCTCGGGAGACTCAAAGGGCAT---GCGCAGGGCAAGGAAA 4521
Query 146449 GCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCA 146508
|||||||| |||||||| | || ||||||| || ||||| | |||| ||||| |
Sbjct 4522 GCGTCGGCAAGACCCTGGACACCAACACCAATAGGTCGGTGGCGCATGTTGCTGTTGCGA 4581
Query 146509 GCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATT 146568
|| || ||||||| |||| || ||||||||||| || || || || || |
Sbjct 4582 GCCTCCTGGACAGGATAGTAGTTGACATCAATGATCTTGTTAAGGTTGCGGACAACGACC 4641
Query 146569 TTCGTCAAACGATTCAGCAGGACATAGTC--AAATGTTTTAGTTTTAACGTTGACGCACT 146626
|| || | || ||| | |||| | | || ||| || || |||| |
Sbjct 4642 TTGGTGACTTCATGAAGCTTCTTAAAGTCGTAGCAGCCTTCGTTGTA--GTCGACGTAAG 4699
Query 146627 TGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCA 146686
|| ||| | |||||||||||| || |||||| ||| || | | || |||| |
Sbjct 4700 CAGGGAGGGCCAAAGAGGCCAAGTTGCACACGGCAACCTCATCTGGGGCACAGTACTCGA 4759
Query 146687 CAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACT 146746
||||||| |||||||||| || |||| | |||| || |||||||| || ||
Sbjct 4760 TGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTTTGGTTGCT---CT 4816
Query 146747 T---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGA 146803
| ||||||| | ||||||||||||||| | || || || ||| | || || |
Sbjct 4817 TGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCA 4876
Query 146804 CGAT-GAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACA-GTTTATTCTTTT 146860
||| |||| | || | | |||| | | ||||| || || || | ||| |
Sbjct 4877 GGATGGAAT---ACCACAGCTTCTGAGCGCGGATGGTCTTGCGACCACGTCCCTCCTTCT 4933
Query 146861 CGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGGATA 146918
|||| ||||| ||||| || || || | || || ||| ||||| ||| |
Sbjct 4934 CGTACTTCTCATACAAGGCCTCGAACTCCTCG--CCATAGCAGTCAGCAAGGCCAGGACA 4991
Query 146919 CTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATC 146978
| ||||| || | |||| ||| || |||| || || || | ||| || | ||
Sbjct 4992 TTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGGTC 5051
Query 146979 GGGAATCCAAAGGCCCAGCATCAAGTCGCGAGC 147011
||||||||| || | || | ||||||||||||
Sbjct 5052 GGGAATCCAGAGAGCAAGGAACAAGTCGCGAGC 5084
>seq1667
Length=31153
Score = 134 bits (148), Expect = 1e-26
Identities = 175/238 (74%), Gaps = 3/238 (1%)
Strand=Plus/Minus
Query 126877 CTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATT 126936
|| ||||| ||||| || | || | |||||| || | ||| ||| || || || ||
Sbjct 23476 CTTTACTGG-CCACCACGAAGACGAAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTT 23418
Query 126937 GTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTG 126996
||| |||| || |||||| || || ||||| || ||||| ||||||| ||||||||
Sbjct 23417 GTAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTG 23358
Query 126997 ATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCG 127055
|| ||||| ||||||||||||||| || || ||||| ||||| ||| |||||| |
Sbjct 23357 GTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGT-CGATGGTGTCGG 23299
Query 127056 TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || || |||| ||| | || ||||| || ||||| || || |||||||||||
Sbjct 23298 AAGATTCCACCTCGAGGGTGATTGTCTTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| |||||||| ||||| |||| || |||||| || || ||||| || ||||| |
Sbjct 23204 CTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCGAGCTGCTTACCAGCAAA 23145
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTT 127040
||| | ||||||||||| || || || |||||||||||| ||| | | || ||||| |
Sbjct 23144 GATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCC-TGAATCTTTGACTTGACAT 23086
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100
|||| |||||| | ||| || || | || | || |||||||||| || || |
Sbjct 23085 TGTCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 23026
Query 127101 CAAAAATCTGCAT 127113
| || ||||||||
Sbjct 23025 CGAAGATCTGCAT 23013
Score = 105 bits (116), Expect = 6e-18
Identities = 145/200 (73%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || || ||||| ||| || || || ||| || || || || |||
Sbjct 22682 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCA 22623
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| | |||| |||||||| || ||||| ||||||||||||||| ||| || ||||
Sbjct 22622 GCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGACTTG 22563
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||| || | ||| || |||| ||| | || |||||||| || ||
Sbjct 22562 ACGTTG-TCGATGGTATCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 22504
Query 127096 TTTTACAAAAATCTGCATGG 127115
|| || || || |||||||
Sbjct 22503 CTTGACGAAGATTTGCATGG 22484
Score = 89.7 bits (98), Expect = 5e-13
Identities = 133/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||| ||| | || || ||| || ||||| || ||
Sbjct 22981 GTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCG 22922
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| |||||||| || ||||| || |||||||||||| ||| || ||||
Sbjct 22921 GCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 22862
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| || | ||| || | ||| || |||| ||| | || || ||||| || ||
Sbjct 22861 ACGTTG-TCAATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGT 22803
Query 127096 TTTTAC 127101
|| ||
Sbjct 22802 CTTGAC 22797
>seq1790
Length=95376
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | |||| |||| || | |||||||| || || || ||||| |||
Sbjct 27665 GCACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 27724
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| || || ||| || ||||| || |||||| |||||||||||||||| || ||
Sbjct 27725 GAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGG 27784
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| ||||||||||||||| ||| || ||||| | |||| |||||| | | |||
Sbjct 27785 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 27844
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||| | ||| || || || || || || || |||||||||||
Sbjct 27845 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 27894
>seq2135
Length=79206
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| ||| || ||||| || ||||| |||||
Sbjct 76470 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 76411
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
||||||||||| || || || ||||||||||||||| ||| || ||||| | |||
Sbjct 76410 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 76351
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||| | |||||| || | ||| | || ||||| ||||| || || || |||
Sbjct 76350 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 76291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475486802445200
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