Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1903 140 3e-28 seq1667 134 1e-26 seq1790 127 2e-24 seq2135 95.1 1e-14 >seq1903 Length=20131 Score = 140 bits (154), Expect = 3e-28 Identities = 640/993 (64%), Gaps = 39/993 (4%) Strand=Plus/Plus Query 146037 GTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCG 146096 ||| || ||| |||||| || | ||||||| ||||| ||||||||||| || || || Sbjct 4113 GTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACG 4172 Query 146097 CCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGC 146156 | | | || | |||| ||| | |||||||| |||||||||| || || ||||| | Sbjct 4173 TCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGA 4232 Query 146157 CGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAA 146215 || | || || |||||| || || ||||| ||| | ||| ||||| || ||| | Sbjct 4233 GGTACTGGCAGTGGGCATGGGGGCGACGAGCAAGCTGTTGCGCACACCGTGCTCCTTG-A 4291 Query 146216 TCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGT 146275 ||| ||| || | ||| | |||||| || | || | || || | ||| Sbjct 4292 TCTGCTCCTTGAGCGAGTCCCACTCCCACAA---GTCAGAAGGCTTGACATCCCACATGT 4348 Query 146276 CGTAATGCATAGTG-CCGCGGA-ACAGGGGGCTAT-TCTCGTACGATTCATAAGGACCGT 146332 || | || | || || |||| |||| | || || | ||||||| || ||||| | Sbjct 4349 CGAATTGGAGGATGCCCTCGGATGCAGGTG---ATCCCTTGAACGATTCGTAGGGACCCT 4405 Query 146333 CGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCA 146392 | | |||||| | || | ||| ||||| |||| ||| || ||||| |||| Sbjct 4406 CCACCTTGGCAATCTCCATGGAAGCCTCCAGGGCCGCGTGGTAGATTGTCTCAAAGATCT 4465 Query 146393 TGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACA---AAG 146448 | ||| | |||| | ||||| || |||| || | | || || || Sbjct 4466 GCTTGTTCA-GCTCGCGAGCCTCGGGAGACTCAAAGGGCAT---GCGCAGGGCAAGGAAA 4521 Query 146449 GCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCA 146508 |||||||| |||||||| | || ||||||| || ||||| | |||| ||||| | Sbjct 4522 GCGTCGGCAAGACCCTGGACACCAACACCAATAGGTCGGTGGCGCATGTTGCTGTTGCGA 4581 Query 146509 GCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATT 146568 || || ||||||| |||| || ||||||||||| || || || || || | Sbjct 4582 GCCTCCTGGACAGGATAGTAGTTGACATCAATGATCTTGTTAAGGTTGCGGACAACGACC 4641 Query 146569 TTCGTCAAACGATTCAGCAGGACATAGTC--AAATGTTTTAGTTTTAACGTTGACGCACT 146626 || || | || ||| | |||| | | || ||| || || |||| | Sbjct 4642 TTGGTGACTTCATGAAGCTTCTTAAAGTCGTAGCAGCCTTCGTTGTA--GTCGACGTAAG 4699 Query 146627 TGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCA 146686 || ||| | |||||||||||| || |||||| ||| || | | || |||| | Sbjct 4700 CAGGGAGGGCCAAAGAGGCCAAGTTGCACACGGCAACCTCATCTGGGGCACAGTACTCGA 4759 Query 146687 CAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACT 146746 ||||||| |||||||||| || |||| | |||| || |||||||| || || Sbjct 4760 TGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTTTGGTTGCT---CT 4816 Query 146747 T---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGA 146803 | ||||||| | ||||||||||||||| | || || || ||| | || || | Sbjct 4817 TGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCA 4876 Query 146804 CGAT-GAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACA-GTTTATTCTTTT 146860 ||| |||| | || | | |||| | | ||||| || || || | ||| | Sbjct 4877 GGATGGAAT---ACCACAGCTTCTGAGCGCGGATGGTCTTGCGACCACGTCCCTCCTTCT 4933 Query 146861 CGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGGATA 146918 |||| ||||| ||||| || || || | || || ||| ||||| ||| | Sbjct 4934 CGTACTTCTCATACAAGGCCTCGAACTCCTCG--CCATAGCAGTCAGCAAGGCCAGGACA 4991 Query 146919 CTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATC 146978 | ||||| || | |||| ||| || |||| || || || | ||| || | || Sbjct 4992 TTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGGTC 5051 Query 146979 GGGAATCCAAAGGCCCAGCATCAAGTCGCGAGC 147011 ||||||||| || | || | |||||||||||| Sbjct 5052 GGGAATCCAGAGAGCAAGGAACAAGTCGCGAGC 5084 >seq1667 Length=31153 Score = 134 bits (148), Expect = 1e-26 Identities = 175/238 (74%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 126877 CTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATT 126936 || ||||| ||||| || | || | |||||| || | ||| ||| || || || || Sbjct 23476 CTTTACTGG-CCACCACGAAGACGAAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTT 23418 Query 126937 GTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTG 126996 ||| |||| || |||||| || || ||||| || ||||| ||||||| |||||||| Sbjct 23417 GTAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTG 23358 Query 126997 ATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCG 127055 || ||||| ||||||||||||||| || || ||||| ||||| ||| |||||| | Sbjct 23357 GTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGT-CGATGGTGTCGG 23299 Query 127056 TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || |||| ||| | || ||||| || ||||| || || ||||||||||| Sbjct 23298 AAGATTCCACCTCGAGGGTGATTGTCTTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| |||||||| ||||| |||| || |||||| || || ||||| || ||||| | Sbjct 23204 CTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCGAGCTGCTTACCAGCAAA 23145 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTT 127040 ||| | ||||||||||| || || || |||||||||||| ||| | | || ||||| | Sbjct 23144 GATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCC-TGAATCTTTGACTTGACAT 23086 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| |||||| | ||| || || | || | || |||||||||| || || | Sbjct 23085 TGTCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 23026 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 23025 CGAAGATCTGCAT 23013 Score = 105 bits (116), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| || || || ||| || || || || ||| Sbjct 22682 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCA 22623 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | |||| |||||||| || ||||| ||||||||||||||| ||| || |||| Sbjct 22622 GCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGACTTG 22563 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||| || | ||| || |||| ||| | || |||||||| || || Sbjct 22562 ACGTTG-TCGATGGTATCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 22504 Query 127096 TTTTACAAAAATCTGCATGG 127115 || || || || ||||||| Sbjct 22503 CTTGACGAAGATTTGCATGG 22484 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| ||| | || || ||| || ||||| || || Sbjct 22981 GTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCG 22922 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || ||||| || |||||||||||| ||| || |||| Sbjct 22921 GCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 22862 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||| || | ||| || |||| ||| | || || ||||| || || Sbjct 22861 ACGTTG-TCAATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGT 22803 Query 127096 TTTTAC 127101 || || Sbjct 22802 CTTGAC 22797 >seq1790 Length=95376 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| |||| || | |||||||| || || || ||||| ||| Sbjct 27665 GCACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 27724 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || ||| || ||||| || |||||| |||||||||||||||| || || Sbjct 27725 GAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGG 27784 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| Sbjct 27785 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 27844 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | ||| || || || || || || || ||||||||||| Sbjct 27845 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 27894 >seq2135 Length=79206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || ||||| ||||| Sbjct 76470 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 76411 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 ||||||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 76410 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 76351 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || ||||| ||||| || || || ||| Sbjct 76350 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 76291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475486802445200