Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1903 230 3e-55 seq535 141 1e-28 seq1702 93.3 5e-14 >seq1903 Length=20131 Score = 230 bits (254), Expect = 3e-55 Identities = 1177/1855 (63%), Gaps = 54/1855 (3%) Strand=Plus/Plus Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 115578 |||| | |||| |||||||| || ||||| | || ||||||||||| || ||| Sbjct 3796 TCAACGGTGAATTGAATGGGAGCAGCTGCGGCCTGAGTGCGCAGGTAGTACATGCCGGTC 3855 Query 115579 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTT 115638 ||||| || |||||||| || | ||||| || | |||| | ||| || Sbjct 3856 TTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGTCC 3915 Query 115639 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 115698 | |||| || ||||| ||||| || || ||||| || ||||| |||||||| Sbjct 3916 TTCATGTGGATGTTCAGGGACTGGGACTGGTCAATGAAAGCACCACGATCAGCCGCCATC 3975 Query 115699 TCAATCACATCCTTCATCTTGA----TTTCCCACACAGTTCTGTAGAGGTTCTTAATATC 115754 | | || || || ||| | |||||||| || |||| | | ||| ||||| Sbjct 3976 TGGA-CA-AT--TTGGCGCTGAGAAATCTCCCACACGGTCTTGTACAAGGCCTTGATATC 4031 Query 115755 ATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGA---TCCTT 115811 || ||||| | ||| || || || ||||| || | |||| | | ||| Sbjct 4032 TTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTT---CTCAGCAATGATACGGTTCTT 4088 Query 115812 CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGA 115867 ||| | | |||||||| || | | || |||| | | ||| | |||| Sbjct 4089 CATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGG----TTGA 4144 Query 115868 CAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAA 115927 |||| ||||| || || ||| |||| | | |||||||||| ||||| ||||| | Sbjct 4145 CAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGA 4204 Query 115928 AGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAA 115987 ||||||| ||||| |||| || |||| || ||| ||||||||||| || | ||| | Sbjct 4205 AGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTGGGCATGGGGGCGACGAGCA 4264 Query 115988 GGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGA 116047 ||||||||| | ||| | || | || | |||||||| | |||||| || | | Sbjct 4265 AGCTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAAGT 4324 Query 116048 GCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCT 116107 | || | |||||||| || || |||||||| || | ||| || || ||||||| Sbjct 4325 CAGAAGGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCT 4384 Query 116108 CAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGT 116167 || | || || || ||||| |||| || | || | ||||| ||||| |||| Sbjct 4385 TGAACGATTCGTAGGGACCCTCCACCTTGGCAATCTCCATGGAAGCCTCCAGGGCCGCGT 4444 Query 116168 GATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA 116227 | || ||||||||||| || | |||| | |||||| || ||||| | | Sbjct 4445 GGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGGCA 4504 Query 116228 GACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTC 116287 || || || | || || ||||| |||||||| | ||||| || || || | Sbjct 4505 TGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATAGGTCGGTGGC 4564 Query 116288 TCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTA 116347 ||| || || ||||| || || ||||| | || ||| || | | | || | Sbjct 4565 GCATGTTGCTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGACATCAATGATCTTGTTAA 4624 Query 116348 GATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT 116407 | || | || ||||| |||| |||||||||||| | | || | | || | Sbjct 4625 GGTTGCGGACAACGACCTTGGTGACTTCATGAAGCTTCTTAAAGTCGTAGCAGCCTTCGT 4684 Query 116408 CTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 116467 | | ||| || ||| ||||| | || |||| || ||||| | |||||| Sbjct 4685 TGTAGTCGACGTAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCACACGGCAACCTCATCTG 4744 Query 116468 TATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCT 116527 || |||||| || || || || || | || || || ||||| |||| ||||| Sbjct 4745 GGGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCT 4804 Query 116528 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCG 116587 |||| || ||| ||| || ||||||||||||||| | || | || ||||| | Sbjct 4805 TTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGG 4864 Query 116588 TTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCACAG-TGGCGTTG---GC 116642 | |||| | || || | |||| | || ||| || | | ||| ||| | Sbjct 4865 TCTGGGCTTCCAGGATGG-----AATACCACAGCTTCTGAGCGCGGATGGTCTTGCGACC 4919 Query 116643 TCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTG 116701 || ||||||| ||||||||| || | |||||| ||||| || ||| ||| || | Sbjct 4920 ACGTCCCTCCTTCTCGTACTTCTCATACAAGGCCTCGAACTCCTC-GCCATAGCAGTCAG 4978 Query 116702 AGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCG 116759 || || || | | || || | ||| | ||| | ||| || |||||| || Sbjct 4979 CAAGGCCAGGACATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACACG 5036 Query 116760 CTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTC 116819 ||||||||||||||| || |||||||| || ||| | || ||| ||| | ||||| Sbjct 5037 CTTCATGAAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTC 5096 Query 116820 ATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAG 116879 | || || || || | || | || || | || || |||||||| || || || Sbjct 5097 CTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAG 5156 Query 116880 GTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGT 116933 ||| | || | | || | |||| |||| |||| | ||||| || || || Sbjct 5157 GTAGATGGCAAAAGCACCAGGACGCTTG---TTACCACCCTGATCGACATATCTGGCAGT 5213 Query 116934 TGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT 116993 ||| || || |||||||| ||||| ||||| | || || || || || ||| Sbjct 5214 GTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAAT 5273 Query 116994 ACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGA 117053 ||| | |||| | || ||||| || || || ||||| || ||| || || Sbjct 5274 GTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATTTTGGA 5333 Query 117054 GATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGC 117113 || || || | | || || | ||||| || ||||| || |||| | | Sbjct 5334 AATCATGGCACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCATGTC 5393 Query 117114 GATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGA-GGGTTGGT 117171 || | |||||| |||| || ||||| || ||||| |||||||| | |||| || Sbjct 5394 GACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTGAACAGGGGTGGGG 5452 Query 117172 GTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAA 117229 | || ||| ||| | | |||| ||||| | ||| ||||||| |||| || Sbjct 5453 GAGGCATGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAA 5510 Query 117230 TGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCA 117289 |||| || || || || | || |||||||||| ||||| || || || | | Sbjct 5511 TGTCGTCTCCCCAGATGCCAACAGACACCCGCATAATCATGTGCTGTGGCCGCTCAACAA 5570 Query 117290 GGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 | ||||| ||| || | ||||| | ||||| ||||||| ||||| || Sbjct 5571 TCTTGCCATCAAGCTTCAGAAGGTATGACCGCTCCAGAGTCTTGAAGCCAAAGTA 5625 >seq535 Length=62126 Score = 141 bits (156), Expect = 1e-28 Identities = 348/521 (67%), Gaps = 9/521 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| |||||||| ||||| |||||||| || || || ||| |||||| Sbjct 15094 GCAAAGTCAGTGTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCA 15153 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | ||| | || ||||||||| Sbjct 15154 GGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATG 15213 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 ||||| || || || |||| || |||| ||||||||| | ||| | || | Sbjct 15214 CCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGAATC 15273 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759 ||||| || ||||| | |||||||| || || || | ||||| || || | ||| Sbjct 15274 CACTTGATGGCCCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAG 15333 Query 127760 A-GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 | || || | | ||| | || |||||||| | || ||||| || || || | Sbjct 15334 AGGTAGCTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCT 15391 Query 127818 CGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876 || ||||| | | ||| || | ||| | ||||||| | || || ||| ||| Sbjct 15392 CGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 15450 Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936 || ||||| || || | | ||||| ||||| ||||| || | ||| Sbjct 15451 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCA 15510 Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 127993 || || |||||||| | ||||| | || || | ||||||| || | |||||| Sbjct 15511 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 15570 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| |||||||| || ||||| | ||| || || ||||| Sbjct 15571 TCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 15611 >seq1702 Length=100212 Score = 93.3 bits (102), Expect = 5e-14 Identities = 299/448 (67%), Gaps = 21/448 (5%) Strand=Plus/Plus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 ||| ||||| || || || | || || | ||| || ||||| || || || | || Sbjct 77644 ATCGAAGCGGCCAGGTCGCATCAGTGCCTTGTCCAGTATATCGGCACGATTGGTGCCGGC 77703 Query 12764 GATGACAACGA--TGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGT-TGATT 12820 | ||| |||| ||| | |||||| | ||| || ||||| || || |||| | || || Sbjct 77704 CAAGACGACGACCTGCTC-TCTCGTGTT-GAATCCGTCCATTTCCGT-AAGAATCTGGTT 77760 Query 12821 GATGGTTTGTTCACGTTCATCATTCGCGGGCATACCAC--CCGCACTGCGTT---GCTT- 12874 | || ||||| ||||| || || | |||| |||| || | || || Sbjct 77761 AAGTGTGGCCTCACGCTCATCGTTGCCGCCGAATCCACGGCCGCTCTCCATTCGAGCACG 77820 Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 ||| | |||||| |||||||||||||| | ||| || ||| ||| | || | | | Sbjct 77821 ACCAATGGCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGACCCTCAGC 77880 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 || | |||| ||| | | ||| || || ||||||||||||||||| | || | Sbjct 77881 GAACAAGTCTCTCACACGAGAAGGACCCACGCCAACAAACATCTCCACAAACTCGGATCC 77940 Query 12995 G-GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 | || | || ||| || ||| ||| || || || | || |||||| || |||| Sbjct 77941 GCTCACGCT-GAAGAAAGGCACGCCGGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCT 77999 Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC--ACTTC- 13110 | || || |||||| || ||||||| |||||| || || ||| ||||||| |||| Sbjct 78000 TTCCTGTTCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTGGCACCCAGCTTCT 78059 Query 13111 CAAAGTAGCGCTCGGGTTG-TTTAAGAA 13137 |||| | ||||||||| || ||||| Sbjct 78060 CAAACT---TCTCGGGTTGCTTCAAGAA 78084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613489139881800