Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq535 208 1e-48 seq1903 158 2e-33 >seq535 Length=62126 Score = 208 bits (230), Expect = 1e-48 Identities = 556/833 (67%), Gaps = 25/833 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| | | || || |||||||| | || ||||| Sbjct 14820 CTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTT 14879 Query 159709 CTTC-ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || || ||| ||| |||||||| |||||| | ||| || ||||| | Sbjct 14880 GGAAGACTTG-TAGACCTTTTCGTTGCCGAGAGCGACCAGCAGGCGGTCGGCAACAAACT 14938 Query 159768 CGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCA-GCCTAACGGGGAGCGCTTC 159825 | ||||| || | |||| | |||| || || |||| | | | |||||| || || Sbjct 14939 CAATGTA-CTGCTTCATCAGGCTGGAGTTCATGCCAAGCAAGGCGCA-GGGGAGAGCCTC 14996 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT-TCGT 159884 | || ||||||| |||||| ||| || ||||| | || | |||| || | Sbjct 14997 GGTCAAGAACTCCTGCTCAATTCGGACAGCGTCGGTGATGATGT------CACGGATCAT 15050 Query 159885 ACCCCGGCTTGCCCAAAA--TGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 || ||| || | || ||| ||| ||||| |||||||| |||||| Sbjct 15051 CTCCTTGCTGGCACGGTTCTTGAGGTGAGAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAG 15110 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 ||||| || |||||||||| ||||||||| | | | || || ||||||| || ||| Sbjct 15111 ACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTT 15170 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAA 160062 |||| ||| || |||| ||||| |||||||| || ||||| ||||| ||||| ||||| Sbjct 15171 CTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAA 15230 Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || || || | || |||| || | ||| |||| || ||||| | ||||||| || Sbjct 15231 GGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGAATCCACTTGATGGCCCAGTC 15290 Query 160123 AGCCTTCTTTGCGA-TGCACGGCATGCGCTCGACGGCGTTAAACA---ATCTGTCCTGCT 160178 ||||| ||||||| |||| || ||| ||| | |||||| || | | ||| ||| Sbjct 15291 GGCCTT-TTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGC 15349 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 ||| |||||||| || | || ||| ||||| | || | ||| | || | Sbjct 15350 TGTTC---TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCT 15406 Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGA 160298 | || ||||| ||| |||||| || ||||| | ||| ||||| ||| Sbjct 15407 CCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGA 15466 Query 160299 ACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGT 160358 | | | |||| || | || || | || || | ||| |||||||| |||| | || Sbjct 15467 AGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGT 15526 Query 160359 GAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT-GTGTCACGTCTTGG 160417 |||||||||| | ||||||| | ||| || | || | ||||| ||| || || | | Sbjct 15527 GAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTG-CAGATCCTTG 15585 Query 160418 GCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACAT 160470 | || ||||| |||||| ||| |||| || |||| || |||||||||| Sbjct 15586 GACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTTTTGTACAT 15638 >seq1903 Length=20131 Score = 158 bits (174), Expect = 2e-33 Identities = 385/573 (67%), Gaps = 8/573 (1%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900 || || ||||| ||||||| | || | || |||||| | | ||| ||||||||||||| Sbjct 3796 TCAACGGTGAATTGAATGG-GAGCAGCTGC-GGCCTGAGTGCGCAGGTAGTACATGCCGG 3853 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| || || || ||| || | ||||||| | | |||| || |||||| Sbjct 3854 TCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGT 3913 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCA 204020 | |||||| |||||||| |||||| ||||| ||||||| | ||||| || |||| Sbjct 3914 CCTTCATGTGGATGTTCAGGGACTGGGACTGGTCAATGAAAGCACCACGATCAGCCGCCA 3973 Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTT 204080 | | || ||| ||| |||||||||||||| |||||| ||| | | || | | || Sbjct 3974 TCTGGACAATTTGGCGCTGAGAAATCTCCCACACGGTCTTGTACAAGGCCTTGATATCTT 4033 Query 204081 GAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139 || | | | | || ||| || |||||||| || || || | | || || | Sbjct 4034 CGGGGATGT-TGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATG 4092 Query 204140 TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199 | || ||| | ||| || ||| ||| | || |||||||| | ||| Sbjct 4093 GCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGG 4152 Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259 || || |||| || || | ||| | | | |||| ||| | || ||||| |||| Sbjct 4153 AACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCG 4212 Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319 |||||||| | |||||| | ||| ||||| ||||||||||| || | ||||| | |||| Sbjct 4213 TTGTTGCCCAGAATCTGGGAGGTACTGGCAGTGGGCATGGGGGCGACGAGCAAGCTGTTG 4272 Query 204320 CGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGG 204378 |||||||||| | | || |||| ||| || ||| ||| || || || || Sbjct 4273 CGCACACCGTGCTCCTTGA-TCTGCTCCTTGAGCGAGTCCCACTCCCACAAGTCAGAAGG 4331 Query 204379 TTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 || || ||||||||||||| || | |||||| Sbjct 4332 CTTGACATCCCACATGTCGAATTGGAGGATGCC 4364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795131792618800