Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq535 208 1e-48
seq1903 158 2e-33
>seq535
Length=62126
Score = 208 bits (230), Expect = 1e-48
Identities = 556/833 (67%), Gaps = 25/833 (3%)
Strand=Plus/Plus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| |||||||||||||| | | || || |||||||| | || |||||
Sbjct 14820 CTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTT 14879
Query 159709 CTTC-ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767
|| || ||| ||| |||||||| |||||| | ||| || ||||| |
Sbjct 14880 GGAAGACTTG-TAGACCTTTTCGTTGCCGAGAGCGACCAGCAGGCGGTCGGCAACAAACT 14938
Query 159768 CGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCA-GCCTAACGGGGAGCGCTTC 159825
| ||||| || | |||| | |||| || || |||| | | | |||||| || ||
Sbjct 14939 CAATGTA-CTGCTTCATCAGGCTGGAGTTCATGCCAAGCAAGGCGCA-GGGGAGAGCCTC 14996
Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT-TCGT 159884
| || ||||||| |||||| ||| || ||||| | || | |||| || |
Sbjct 14997 GGTCAAGAACTCCTGCTCAATTCGGACAGCGTCGGTGATGATGT------CACGGATCAT 15050
Query 159885 ACCCCGGCTTGCCCAAAA--TGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942
|| ||| || | || ||| ||| ||||| |||||||| ||||||
Sbjct 15051 CTCCTTGCTGGCACGGTTCTTGAGGTGAGAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAG 15110
Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002
||||| || |||||||||| ||||||||| | | | || || ||||||| || |||
Sbjct 15111 ACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTT 15170
Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAA 160062
|||| ||| || |||| ||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct 15171 CTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAA 15230
Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122
|| || || | || |||| || | ||| |||| || ||||| | ||||||| ||
Sbjct 15231 GGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGAATCCACTTGATGGCCCAGTC 15290
Query 160123 AGCCTTCTTTGCGA-TGCACGGCATGCGCTCGACGGCGTTAAACA---ATCTGTCCTGCT 160178
||||| ||||||| |||| || ||| ||| | |||||| || | | ||| |||
Sbjct 15291 GGCCTT-TTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGC 15349
Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238
||| |||||||| || | || ||| ||||| | || | ||| | || |
Sbjct 15350 TGTTC---TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCT 15406
Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGA 160298
| || ||||| ||| |||||| || ||||| | ||| ||||| |||
Sbjct 15407 CCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGA 15466
Query 160299 ACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGT 160358
| | | |||| || | || || | || || | ||| |||||||| |||| | ||
Sbjct 15467 AGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGT 15526
Query 160359 GAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT-GTGTCACGTCTTGG 160417
|||||||||| | ||||||| | ||| || | || | ||||| ||| || || | |
Sbjct 15527 GAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTG-CAGATCCTTG 15585
Query 160418 GCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACAT 160470
| || ||||| |||||| ||| |||| || |||| || ||||||||||
Sbjct 15586 GACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTTTTGTACAT 15638
>seq1903
Length=20131
Score = 158 bits (174), Expect = 2e-33
Identities = 385/573 (67%), Gaps = 8/573 (1%)
Strand=Plus/Plus
Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900
|| || ||||| ||||||| | || | || |||||| | | ||| |||||||||||||
Sbjct 3796 TCAACGGTGAATTGAATGG-GAGCAGCTGC-GGCCTGAGTGCGCAGGTAGTACATGCCGG 3853
Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960
|||| || || || ||| || | ||||||| | | |||| || ||||||
Sbjct 3854 TCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGT 3913
Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCA 204020
| |||||| |||||||| |||||| ||||| ||||||| | ||||| || ||||
Sbjct 3914 CCTTCATGTGGATGTTCAGGGACTGGGACTGGTCAATGAAAGCACCACGATCAGCCGCCA 3973
Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTT 204080
| | || ||| ||| |||||||||||||| |||||| ||| | | || | | ||
Sbjct 3974 TCTGGACAATTTGGCGCTGAGAAATCTCCCACACGGTCTTGTACAAGGCCTTGATATCTT 4033
Query 204081 GAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139
|| | | | | || ||| || |||||||| || || || | | || || |
Sbjct 4034 CGGGGATGT-TGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATG 4092
Query 204140 TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199
| || ||| | ||| || ||| ||| | || |||||||| | |||
Sbjct 4093 GCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGG 4152
Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259
|| || |||| || || | ||| | | | |||| ||| | || ||||| ||||
Sbjct 4153 AACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCG 4212
Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319
|||||||| | |||||| | ||| ||||| ||||||||||| || | ||||| | ||||
Sbjct 4213 TTGTTGCCCAGAATCTGGGAGGTACTGGCAGTGGGCATGGGGGCGACGAGCAAGCTGTTG 4272
Query 204320 CGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGG 204378
|||||||||| | | || |||| ||| || ||| ||| || || || ||
Sbjct 4273 CGCACACCGTGCTCCTTGA-TCTGCTCCTTGAGCGAGTCCCACTCCCACAAGTCAGAAGG 4331
Query 204379 TTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411
|| || ||||||||||||| || | ||||||
Sbjct 4332 CTTGACATCCCACATGTCGAATTGGAGGATGCC 4364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795131792618800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |