Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1790 136 9e-27 seq1667 129 1e-24 seq2135 86.0 1e-11 >seq1790 Length=95376 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| || |||||||| |||| ||||||||| | | || Sbjct 27674 CGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTT 27733 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || |||||||| | |||||||||||||| ||| || Sbjct 27734 CGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCC 27793 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 27794 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 27853 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| || || || ||||| || Sbjct 27854 GTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTG 27891 >seq1667 Length=31153 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || || ||||||||| | ||||||||| |||||| | || || Sbjct 23224 AGGACAAGGTGAAGTGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCC 23165 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||||||||||||||| ||||| || || || ||| Sbjct 23164 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCC 23105 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| || |||| |||||||| || || || ||||| ||||| ||| Sbjct 23104 TGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTC 23045 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 23044 TTGCCGGTCAACGTCTTGACGAAGATCTG 23016 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || |||||||| || |||||||| |||| ||||||||| | || ||| Sbjct 22706 CGAAGGCGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTT 22647 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| || || || || |||||||||||||| ||| ||| || Sbjct 22646 CGGCCATCCTCGAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCC 22587 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||| || | | || || || | Sbjct 22586 TCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTATCGGACGACTCCACCTCGAGG 22527 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || ||||| Sbjct 22526 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 22489 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || |||||| |||| ||||||||| ||| || Sbjct 23461 CGAAGACGAAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 23402 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || |||||||||||||| || || ||||| | ||||||||||| ||| ||| || Sbjct 23401 CGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCC 23342 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| |||||| | | ||| || || | Sbjct 23341 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGG 23282 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || |||||||| || || ||||| || Sbjct 23281 GTGATTGTCTTGCCTGTGAGAGTCTTGACGAAAATCTG 23244 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||||||||| |||||||| || | ||||||||| | | || | ||||| Sbjct 22996 AGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCC 22937 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| | ||||||||||| ||| || || || ||| Sbjct 22936 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 22877 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | ||| || | || || || || | ||||| ||| Sbjct 22876 TGGATCTTGGACTTGACGTTGTCAATGGTATCAGATGACTCCACCTCGAGGGTGATGGTC 22817 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || || ||||| || || || Sbjct 22816 TTTCCGGTGAGGGTCTTGAC 22797 >seq2135 Length=79206 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | ||||| || |||||||| || || |||| Sbjct 76472 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 76413 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||||||||| ||| || || ||||| ||||| ||| || | Sbjct 76412 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 76353 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || || | ||||| ||||| ||||| || || ||||| | Sbjct 76352 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 76293 Query 199620 AA 199621 || Sbjct 76292 AA 76291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178886027882785