Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2190 241 2e-58
seq780 131 2e-25
seq1903 111 2e-19
>seq2190
Length=78294
Score = 241 bits (266), Expect = 2e-58
Identities = 468/689 (68%), Gaps = 8/689 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||||||||||||||||||||| || || || || || | ||||| || ||||| ||
Sbjct 74858 TCGAAATCTTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATGCCC 74917
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | | | || |||||||| ||||| ||||| || || || ||||| |||
Sbjct 74918 TCCTCAATGGTCAGGAGAGAGACATCAAAGGTACCGCCACCGAGATCGAAGATGAGGACG 74977
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| || | || ||||| || || ||||| || || || || || || || ||
Sbjct 74978 TTGCGCTCACCCTCGACCTTCTTGTCCAGGCCGTAGGCAATGGCAGCAGCGGTGGGCTCG 75037
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| || ||||| || ||| ||||| ||||| | || || || || || || ||
Sbjct 75038 TTGATGATACGCAGGACGTTGAGGCCGGCAATGAGACCGGCGTCCTTGGTGGCCTGACGC 75097
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| ||||| |||||||| ||||| || | ||| |||| |||| | | |||||
Sbjct 75098 TGGCTGTCGTTGAAGTAGGCGGGGACAGTGATGACGGCGTTGTTGACGGTGGTTCCGAGG 75157
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| || || || | || ||| ||||| || | ||| || || ||||| || | |
Sbjct 75158 TAGGACTCGGCAGTCTCACGCATCTTGGTCAGGATCATGGAGGAGATCTCCTCGGGGGTG 75217
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGG 7875
|| | ||| | || || || || || || || | | ||| || | ||| | |
Sbjct 75218 AAGTTCTTCTTCTCGCCCTTGAACTCGACCTCGACGACGGGCTT----GGAGCCCTTGTC 75273
Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935
|| || ||| | | | | ||||| || | ||||||| ||| | |||||| |
Sbjct 75274 GACAATCTTGAAGGGGAAGTGCTTCATGTCAGCCTGGACCTCGGAGTCGGCAAACTTGCG 75333
Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995
|||||| | ||||| || || || || ||||| | |||||||||||| ||||||||
Sbjct 75334 TCCGATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTT 75393
Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055
||||| || || || ||||| || | || || || || ||| |||| ||||||||
Sbjct 75394 GGCCGCATCACCAATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAGGGGGTCGT 75450
Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115
||| || || |||||||| || || || || ||||| | | ||| ||||||||
Sbjct 75451 TCGGTTGCCCTGGTCGTTGGCGATGATATCACATCGGTCCTCACGGAAGATACCGACGCA 75510
Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144
|| ||||| || || | || |||||||
Sbjct 75511 AGAGTACGTAGTACCCAGGTCGATACCGA 75539
>seq780
Length=56788
Score = 131 bits (144), Expect = 2e-25
Identities = 360/545 (66%), Gaps = 15/545 (3%)
Strand=Plus/Minus
Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303
|| ||||| ||||| |||||||| |||| | ||| || | || ||| | | ||
Sbjct 53058 AGCTCCTCGAAACGAGCACGGGTGATGGTCATGGTGAAGTCCTCACCCTCGAAGAGAGAG 52999
Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
||||| |||||||| | || || || | ||| || ||||| || ||||| || |
Sbjct 52998 TCAATCTCAATGGTGGCCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 52941
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGT---TACCGGAAATATCTTTCTTATGTTTAC 7418
| || || | | || || ||||| |||| | | || || ||||| || |
Sbjct 52940 CAGTGCGGAGTCTTCGGAGAGCACGGGGGTCGTTGCTGGGG---TCCTTCTTGCTCTTGC 52884
Query 7419 GTTTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477
| | ||||| | | |||| || || || | | || || || | |||||||||
Sbjct 52883 GGGTGAACTCCTTCTTGCAGTGGTCCAACAGGT-TGGTGTCAAAGTCCTGGCCACCCAAG 52825
Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537
|| || || || ||||| || ||||| |||| ||| || | ||||| | || ||
Sbjct 52824 TGGGTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGCAGGGAG 52765
Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC 7597
||||| || ||||||||||| || || | || || ||||| || | ||| | ||
Sbjct 52764 ACATCGAAAGTACCACCACCAAGATCGTAGATCAGGACGTTGCGCTCCTTGTCAGTCTTA 52705
Query 7598 TTATCG---AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
| | |||||||| |||||||| || || || || || || || ||||| || |
Sbjct 52704 CCAGCACCCAGACCGTAGGCGATAGCGGCAGCGGTAGGCTCGTTGATGATACGGAGGACG 52645
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| ||||||||||| | | ||||| || || || || || || ||||| ||||||
Sbjct 52644 TTGAGGCCAGCAATGGCACCAGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAG 52585
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774
|| ||||| || | ||| || | | || ||||| ||||| | | || || || ||
Sbjct 52584 GCGGGGACAGTGATGACAGCCTTCTCAACCTTCTTGCCGAGCTTGGTCTCAGCAATCTCC 52525
Query 7775 TTCAT 7779
|||||
Sbjct 52524 TTCAT 52520
>seq1903
Length=20131
Score = 111 bits (122), Expect = 2e-19
Identities = 342/523 (65%), Gaps = 16/523 (3%)
Strand=Plus/Plus
Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618
||||| || |||||||| | || |||||||| | || || | ||| ||| |
Sbjct 5029 TCAACACGCTTCATGAAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGG 5088
Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678
||||||| | || || ||| || | || || || || | | |||||||||||
Sbjct 5089 ACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAG 5148
Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732
|| || | |||| |||| || || | ||||| || | |||| |||||||
Sbjct 5149 GGCTCGAGGTAGATGGCAAAAGCACC---AGGACGCTTGTTACCACCCTGATCGACATAT 5205
Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792
|| || || ||| ||||||| | ||| ||||||||||| | ||| || || || ||
Sbjct 5206 CTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTG 5265
Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852
||| ||| | || | ||||| | ||| |||| || || ||||| ||||||
Sbjct 5266 CCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCC 5325
Query 105853 CACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCC 105912
|| || ||||| || | || || || ||||| ||||||||||| |||
Sbjct 5326 ATTTTGGAAATCATGGCACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCC 5385
Query 105913 TTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACA- 105970
|| | | | || ||| || || |||| || || ||| || ||||| || |||||||
Sbjct 5386 TTCATGTCGACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTGAACAG 5444
Query 105971 GAGTTGGTGTTGCATGAATGAACAAACCTT--TCGATAACGCTTCGTATGTTTCCAGGAC 106028
| || || | ||||| |||| || ||| | || | | |||||| ||||||||
Sbjct 5445 GGGTGGGGGAGGCATGGGTGAAGAA--CTTGCTAGACATGAGGTTGTATGTCTCCAGGAC 5502
Query 106029 GTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATA 106071
| ||||| |||| ||| || |||| || || ||||||
Sbjct 5503 ACGCTCAATGTCGTCTCCCCAGATGCCAACAGACACCCGCATA 5545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635114103278200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |