Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2190 241 2e-58 seq780 131 2e-25 seq1903 111 2e-19 >seq2190 Length=78294 Score = 241 bits (266), Expect = 2e-58 Identities = 468/689 (68%), Gaps = 8/689 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||||||||| || || || || || | ||||| || ||||| || Sbjct 74858 TCGAAATCTTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATGCCC 74917 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || |||||||| ||||| ||||| || || || ||||| ||| Sbjct 74918 TCCTCAATGGTCAGGAGAGAGACATCAAAGGTACCGCCACCGAGATCGAAGATGAGGACG 74977 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || ||||| || || ||||| || || || || || || || || Sbjct 74978 TTGCGCTCACCCTCGACCTTCTTGTCCAGGCCGTAGGCAATGGCAGCAGCGGTGGGCTCG 75037 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| ||||| ||||| | || || || || || || || Sbjct 75038 TTGATGATACGCAGGACGTTGAGGCCGGCAATGAGACCGGCGTCCTTGGTGGCCTGACGC 75097 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || | ||| |||| |||| | | ||||| Sbjct 75098 TGGCTGTCGTTGAAGTAGGCGGGGACAGTGATGACGGCGTTGTTGACGGTGGTTCCGAGG 75157 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || || | || ||| ||||| || | ||| || || ||||| || | | Sbjct 75158 TAGGACTCGGCAGTCTCACGCATCTTGGTCAGGATCATGGAGGAGATCTCCTCGGGGGTG 75217 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGG 7875 || | ||| | || || || || || || || | | ||| || | ||| | | Sbjct 75218 AAGTTCTTCTTCTCGCCCTTGAACTCGACCTCGACGACGGGCTT----GGAGCCCTTGTC 75273 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 || || ||| | | | | ||||| || | ||||||| ||| | |||||| | Sbjct 75274 GACAATCTTGAAGGGGAAGTGCTTCATGTCAGCCTGGACCTCGGAGTCGGCAAACTTGCG 75333 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 |||||| | ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 75334 TCCGATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTT 75393 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||||| || || || ||||| || | || || || || ||| |||| |||||||| Sbjct 75394 GGCCGCATCACCAATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAGGGGGTCGT 75450 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 ||| || || |||||||| || || || || ||||| | | ||| |||||||| Sbjct 75451 TCGGTTGCCCTGGTCGTTGGCGATGATATCACATCGGTCCTCACGGAAGATACCGACGCA 75510 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144 || ||||| || || | || ||||||| Sbjct 75511 AGAGTACGTAGTACCCAGGTCGATACCGA 75539 >seq780 Length=56788 Score = 131 bits (144), Expect = 2e-25 Identities = 360/545 (66%), Gaps = 15/545 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| |||||||| |||| | ||| || | || ||| | | || Sbjct 53058 AGCTCCTCGAAACGAGCACGGGTGATGGTCATGGTGAAGTCCTCACCCTCGAAGAGAGAG 52999 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| |||||||| | || || || | ||| || ||||| || ||||| || | Sbjct 52998 TCAATCTCAATGGTGGCCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 52941 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGT---TACCGGAAATATCTTTCTTATGTTTAC 7418 | || || | | || || ||||| |||| | | || || ||||| || | Sbjct 52940 CAGTGCGGAGTCTTCGGAGAGCACGGGGGTCGTTGCTGGGG---TCCTTCTTGCTCTTGC 52884 Query 7419 GTTTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 | | ||||| | | |||| || || || | | || || || | ||||||||| Sbjct 52883 GGGTGAACTCCTTCTTGCAGTGGTCCAACAGGT-TGGTGTCAAAGTCCTGGCCACCCAAG 52825 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || ||||| || ||||| |||| ||| || | ||||| | || || Sbjct 52824 TGGGTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGCAGGGAG 52765 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC 7597 ||||| || ||||||||||| || || | || || ||||| || | ||| | || Sbjct 52764 ACATCGAAAGTACCACCACCAAGATCGTAGATCAGGACGTTGCGCTCCTTGTCAGTCTTA 52705 Query 7598 TTATCG---AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 | | |||||||| |||||||| || || || || || || || ||||| || | Sbjct 52704 CCAGCACCCAGACCGTAGGCGATAGCGGCAGCGGTAGGCTCGTTGATGATACGGAGGACG 52645 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||||||||| | | ||||| || || || || || || ||||| |||||| Sbjct 52644 TTGAGGCCAGCAATGGCACCAGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAG 52585 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | ||| || | | || ||||| ||||| | | || || || || Sbjct 52584 GCGGGGACAGTGATGACAGCCTTCTCAACCTTCTTGCCGAGCTTGGTCTCAGCAATCTCC 52525 Query 7775 TTCAT 7779 ||||| Sbjct 52524 TTCAT 52520 >seq1903 Length=20131 Score = 111 bits (122), Expect = 2e-19 Identities = 342/523 (65%), Gaps = 16/523 (3%) Strand=Plus/Plus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618 ||||| || |||||||| | || |||||||| | || || | ||| ||| | Sbjct 5029 TCAACACGCTTCATGAAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGG 5088 Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678 ||||||| | || || ||| || | || || || || | | ||||||||||| Sbjct 5089 ACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAG 5148 Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732 || || | |||| |||| || || | ||||| || | |||| ||||||| Sbjct 5149 GGCTCGAGGTAGATGGCAAAAGCACC---AGGACGCTTGTTACCACCCTGATCGACATAT 5205 Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792 || || || ||| ||||||| | ||| ||||||||||| | ||| || || || || Sbjct 5206 CTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTG 5265 Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852 ||| ||| | || | ||||| | ||| |||| || || ||||| |||||| Sbjct 5266 CCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCC 5325 Query 105853 CACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCC 105912 || || ||||| || | || || || ||||| ||||||||||| ||| Sbjct 5326 ATTTTGGAAATCATGGCACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCC 5385 Query 105913 TTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACA- 105970 || | | | || ||| || || |||| || || ||| || ||||| || ||||||| Sbjct 5386 TTCATGTCGACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTGAACAG 5444 Query 105971 GAGTTGGTGTTGCATGAATGAACAAACCTT--TCGATAACGCTTCGTATGTTTCCAGGAC 106028 | || || | ||||| |||| || ||| | || | | |||||| |||||||| Sbjct 5445 GGGTGGGGGAGGCATGGGTGAAGAA--CTTGCTAGACATGAGGTTGTATGTCTCCAGGAC 5502 Query 106029 GTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATA 106071 | ||||| |||| ||| || |||| || || |||||| Sbjct 5503 ACGCTCAATGTCGTCTCCCCAGATGCCAACAGACACCCGCATA 5545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635114103278200