Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1903 250 3e-61 seq535 140 4e-28 seq1702 98.7 1e-15 >seq1903 Length=20131 Score = 250 bits (276), Expect = 3e-61 Identities = 936/1443 (65%), Gaps = 50/1443 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| | |||||||| | | || ||| || || || ||||| ||| Sbjct 5559 CCACAGCACATGATTATGCGGGTGTCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTC 5500 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCC-TCTT 111730 ||||||||||| || ||||| | | |||| ||| || | || |||| | || Sbjct 5499 CTGGAGACATACAACCTCATGTCTAGCAAGTTCTTCACCCATGCCTCCCCCACCCCTGTT 5440 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| || |||| ||||| || ||| | | | | ||||| || Sbjct 5439 CAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGACGA 5380 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 | ||| | || || || | ||| || | ||||||| || || || |||||| Sbjct 5379 TAGTATCGAGGGTATCTATGACACCCTGAAGACATGTGCCATGATTTCCAAAATGGCTGG 5320 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 ||||||||| || || |||| || | |||| | ||| ||| || || || Sbjct 5319 TGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCAA 5260 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 ||| || | ||||||||||| |||||||| || || ||| ||| || | ||||| Sbjct 5259 CGGTACCTCCAACGGTATTATTCCCATGCTTCGAGTGTTCAACAACACTGCCAGATATGT 5200 Query 111971 AAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 | || | ||| | |||| || || | || |||| || ||||| ||||| Sbjct 5199 CGATCAGGGTGG---TAACAAGCGTCCTGGTGCTTTTGCCATCTACCTCGAGCCCTGGCA 5143 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGG 112082 ||| || || | ||||||||||| | || ||||| || | || |||| |||| Sbjct 5142 CGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCGC 5083 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 | ||||| | ||| |||||||||||||| || |||||||||||| | |||||| || Sbjct 5082 T--CGCGACTTGTTCCTTGCTCTCTGGATTCCCGACCTCTTCATGAAGCGTGTTGAGAAG 5025 Query 112143 A--GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTG 112199 | ||| | ||| | ||| | || || || | || || || | || ||| | Sbjct 5024 AACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGTCCTGGCCTTGCTGACTGCTAT- 4968 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GA 112257 || |||||||| || ||| | || ||||||||| | || | || | | | || || Sbjct 4967 GGCGAGGAGTTCGAGGCCTTGTATGAGAAGTACGAGAAGGAGGGACGTG-GTC-GCAAGA 4910 Query 112258 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 | | | ||| | || | ||||| | | || || | | || ||||||||||||| Sbjct 4909 CCATCCGCGCT-CAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGGTAAC 4851 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 || | ||||| ||||| || ||| |||| ||||| || |||||||| |||| Sbjct 4850 CCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAACCTGGGAACC 4791 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 ||| || ||||||||||| || || ||| | || | | | ||||||| || Sbjct 4790 ATCCGCAGCTCCAACCTCTGCACCGAGATCATCGAGTACTGTGCCCCAGATGAGGTTGCC 4731 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--AT 112494 ||||| ||| | || || | || ||||| || || || | | | || ||| | | Sbjct 4730 GTGTGCAACTTGGCCTCTTTGGCCCTCCCTGCTTACGTCGA-CTACA-ACGAAGGCTGCT 4673 Query 112495 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTA 112554 || | | | || || || ||||| || || || ||||| |||| | | Sbjct 4672 ACGACTTTAAGAAGCTTCATGAAGTCACCAAGGTCGTTGTCCGCAACCTTAACAAGATCA 4613 Query 112555 TTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 112614 ||||| || | || || || || ||||| || || ||| | ||||| || | Sbjct 4612 TTGATGTCAACTACTATCCTGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGACCTA 4553 Query 112615 TTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGAT 112673 ||||| | |||||||| ||||| || || | ||| || | || ||| | ||||| Sbjct 4552 TTGGTGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCCCTG-CGCATGCCCTTTGAG 4494 Query 112674 TCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTT 112733 || ||| || || | || || || ||||||||||| || ||||| || || Sbjct 4493 TCTCCCGAGGCTCGCGAGCTGAACAAGCAGATCTTTGAGACAATCTACCACGCGGCCCTG 4434 Query 112734 GAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790 ||||| ||| |||| | || |||| || ||||| || ||| | || |||| || Sbjct 4433 GAGGC---TTCCATGGAGATTGCCAAGGTGGAGGGTCCCTACGAATCGTTCAAGGGATCA 4377 Query 112791 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC--AC 112847 || || || | || | || ||||| || |||||||| | |||| |||| || Sbjct 4376 CCTGCATCCGAGGGCATCCTCCAATTCGACATGTGGGATG------TCAAGCCTTCTGAC 4323 Query 112848 ---TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 112904 | || |||||| | |||||||| | ||||||||| | ||| | || ||||| | Sbjct 4322 TTGTGGGAGTGGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGCTTG 4263 Query 112905 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 112964 | | || || ||||| || ||| ||| | || || |||| || || || ||||| Sbjct 4262 CTCGTCGCCCCCATGCCCACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTC 4203 Query 112965 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 113024 || |||||||| | |||||||| | | || | ||| || || ||||| | ||||| Sbjct 4202 GAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGTC 4143 Query 113025 AAC 113027 ||| Sbjct 4142 AAC 4140 >seq535 Length=62126 Score = 140 bits (154), Expect = 4e-28 Identities = 352/523 (67%), Gaps = 13/523 (2%) Strand=Plus/Minus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 ||||| || |||||| | ||||| || |||||| || |||| ||||| | | | || Sbjct 15611 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 15552 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 || | || ||| | ||||| |||||||||| |||||||| | || ||||| ||| Sbjct 15551 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 15492 Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 101992 || ||||| | | ||| | ||||| || |||| | || || ||| Sbjct 15491 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCC-GAGGCTCGATG 15433 Query 101993 TTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 102051 ||||| | | || | |||| ||| | | | || ||||| ||| |||| Sbjct 15432 CTTCTACGGCT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 15374 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAA-GAAGC-AGCTCTTTGAAGCCATCCAAAC 102109 | |||| || || ||||| | | | | | ||| | ||||| | ||||| | || Sbjct 15373 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 15316 Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||| || |||| || || || || ||||| || |||||| || | |||| | | Sbjct 15315 CATTCCTTGCATTCGCAAAAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGAACTC 15256 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 ||||||||| |||| || | || ||||| || ||||| ||||||||| ||| Sbjct 15255 -TTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTG 15197 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 |||| | | || | ||| |||||||||||||||||||||| ||||| ||| |||| Sbjct 15196 CCTTTGCCTCCATCTTCTGGGTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCA 15137 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| ||||||||||| ||||| || ||| || ||||| Sbjct 15136 ACGAGCTCATCTCTCGTGATGAGGGTCTGCACACTGACTTTGC 15094 >seq1702 Length=100212 Score = 98.7 bits (108), Expect = 1e-15 Identities = 183/262 (70%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 ||| || || || |||||||||| |||||| ||| ||| | ||| | | | || | Sbjct 77827 GGCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGACCCTCAGCGAACAA 77886 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 16182 || | ||||| | ||||| |||||||||||||||||||| | | || || Sbjct 77887 GTCTCTCACACGAGAAGGACCCACGCCAACAAACATCTCCACAAACTCGGATCCGCTCAC 77946 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 || | ||| || || || || || ||| | || ||||||||||||||| || | Sbjct 77947 GCTGAA-GAAAGGCACGCCGGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTG 78005 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGT 16299 | ||||| || ||||| | ||||||||| ||||||||||| || |||| |||| | Sbjct 78006 TTCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTGGCACCCAGCTTCTCAAACT 78065 Query 16300 ATCTCTCAGGTTGCTT-AAGAA 16320 |||| |||||||| ||||| Sbjct 78066 ---TCTCGGGTTGCTTCAAGAA 78084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620724126895600