Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1903 239 5e-58 seq535 98.7 1e-15 seq1424 87.8 2e-12 seq2023 82.4 9e-11 >seq1903 Length=20131 Score = 239 bits (264), Expect = 5e-58 Identities = 1028/1602 (64%), Gaps = 56/1602 (3%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| ||||| ||||| || ||||| |||||||||||||||||| | || || Sbjct 3927 GTTCAGGGACTGGGACTGGTCAATGAAAGCACCACGATCAGCCGCCATCTGGA-----CA 3981 Query 109560 CTTTTG-GCT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATG 109614 ||| | ||| ||| ||||| || ||||||||||| ||||||||| ||||| ||| Sbjct 3982 ATTTGGCGCTGAGAAATCTCCCACACGGTCTTGTACAAGGCCTTGATATCTTCGGGGATG 4041 Query 109615 TCCACGATGTTTTGAATAGAGCCACCAGCCTTCA-CCATGA---GATCCTTCATCTCTTT 109670 | |||||| ||||| ||||| | ||| | |||| | | |||||| | | Sbjct 4042 TTGGGGATGTTCTGAATGGAGCC----GTTCTCAGCAATGATACGGTTCTTCATGGCATC 4097 Query 109671 CGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTC 109730 |||||||| ||| | || || | | ||| |||||| || || || Sbjct 4098 GGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTC 4157 Query 109731 ACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTT 109790 || ||||| ||||| |||||||||| | |||||||| ||||| ||||| ||||| Sbjct 4158 GCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTT 4217 Query 109791 GCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAG 109850 ||| || || || | || || ||||||||||| || | ||| | ||||| || | Sbjct 4218 GCCCAGAATCTGGGAGGTACTGGCAGTGGGCATGGGGGCGACGAGCAAGCTGTTGCGCAC 4277 Query 109851 ACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGT 109910 ||| | | ||| | | |||| | | |||||| || | || | | | || Sbjct 4278 ACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTC----CCACAAGTCA--GAAGG 4331 Query 109911 CTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACT 109970 || |||||||||| || ||| || | ||||| | ||||| || |||||||| Sbjct 4332 CTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTGAACGA 4391 Query 109971 CTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACAT 110030 ||||| | ||||| |||| ||| | ||| |||||||| || ||||| || || || Sbjct 4392 TTCGTAGGGACCCTCCACCTTGGCAATCTCCATGGAAGCCTCCAGGGCCGCGTGGTAGAT 4451 Query 110031 AGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACA 110090 |||||||| || || |||| ||||| ||| | | || ||||| | | || Sbjct 4452 TGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGGCA-TGCGCA 4510 Query 110091 AAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGT 110149 | || || | || || |||||||| ||||| | |||||| || || || ||||| Sbjct 4511 GGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATAGGTCGGTGGCGCATGT 4570 Query 110150 TAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCT 110209 | | ||||| | || || || ||||| || |||| | || || || Sbjct 4571 TGCTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGACATCAATGATCTTGTTAAGGTTGC 4630 Query 110210 TCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAA--CGTTTTCGTCTCCTT 110267 || ||| |||| |||||| || || | | ||| | | |||| | | Sbjct 4631 GGACAACGACCTTGGTGACTTCATGAAGCTTCTTAAAGTCGTAGCAGCCTTCG--TTGTA 4688 Query 110268 ATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC 110327 | ||| || ||||| || | ||| || | |||||||| | | ||| ||| | | Sbjct 4689 GTCGACGTAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCACACGGCAACCTCATCTGGGGC 4748 Query 110328 GGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTG 110387 ||| || | || || || || | |||||| || ||| |||| |||||| || Sbjct 4749 ACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTTTG 4808 Query 110388 ATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTG 110447 || ||| |||||| |||||| ||||||||| | ||| ||||||| || ||||| Sbjct 4809 GTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTG 4868 Query 110448 TGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACC 110504 | | || |||| | ||| | | || | ||| ||| | ||||| | | | || Sbjct 4869 GGCTTCCAGGATGGAATACCACAGCTTCTG-AGCGCGGATGGTCTTGCG--ACCACGTCC 4925 Query 110505 TTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACC 110564 |||| ||||||||| |||||| |||| || |||| || || |||| ||| || Sbjct 4926 CTCCTTCTCGTACTTCTCATACAAGGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGCC 4985 Query 110565 CTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCA--CCCTCCTCAACCCTCTTCATG 110622 | || ||| || | ||| | ||| |||| || |||||| | ||||||| Sbjct 4986 AGGACATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATG 5043 Query 110623 AACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCT 110682 || ||||| |||||||| | || ||| | ||| || || ||||||| | || Sbjct 5044 AAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCG 5103 Query 110683 TGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACA 110742 ||||| ||| || || | || || | || || | |||||| || ||||| |||| Sbjct 5104 TGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATG 5163 Query 110743 GCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTG 110796 || | | || | |||| ||| |||| | ||||| | || ||| ||| Sbjct 5164 GCAAAAGCACC---AGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTG 5220 Query 110797 AAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGAC 110856 || || | ||||| |||||||| || | ||| ||| || || || ||| || Sbjct 5221 AACACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAG 5280 Query 110857 TTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGT 110916 ||||||| ||| ||||| | || || |||||||| ||| || ||| Sbjct 5281 CCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATTTTGGAAATCATG 5340 Query 110917 GCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAG 110975 ||||| ||| | || || |||| ||||| || || ||| |||| || | | | Sbjct 5341 GCACATGTCT-TCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCATGTCGACCAA 5399 Query 110976 AAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGA-GTGTAGGTGTCGCAT 111034 ||||| || |||| ||| | | || || || || ||||| | | || || | |||| Sbjct 5400 GAAGCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGGTGGGGGAGGCAT 5459 Query 111035 GAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAG 111074 | ||| ||| |||| ||||| ||||||||| || || Sbjct 5460 GGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAG 5499 >seq535 Length=62126 Score = 98.7 bits (108), Expect = 1e-15 Identities = 367/559 (66%), Gaps = 16/559 (3%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || ||||| |||||||||||||| || ||| || || Sbjct 15093 GGCAAAGTCAGTGTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 15152 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| |||| ||||| | ||| ||||||| ||| || |||||||| Sbjct 15153 AGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 15212 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC--GAA 119671 |||||| || ||| || || | || |||| || ||||| ||| |||||| ||| Sbjct 15213 GCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGC-AAAGGAAGAGTTCTTGTCCTGAA 15271 Query 119672 -CCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGA 119730 |||||||| ||||||| |||||| ||||| || | || | ||||| | || Sbjct 15272 TCCACTTGATGGCCCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGA 15331 Query 119731 A-AAGTTGCTTC-TTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788 | | || ||| | | | | | ||||| || || | || ||||| |||||||| Sbjct 15332 AGAGGTAGCTGCGCTGGCTGTTC--TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGT 15389 Query 119789 CTCACCATGAACCAT-TTCATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAA 119847 ||| || | | | ||| || ||| || | || || | ||||| |||| | Sbjct 15390 CTCGGAGTGGATGTTCTCCATCATG-ATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGA 15448 Query 119848 TTTGCACTTCGTCAGCAAAATTG-TTGTTGATATTTTCAAAAACAATTCCATCGGATCCA 119906 | || || ||| | || || | | | | || || ||||| ||||| || | Sbjct 15449 TCTGGACCTCG-CCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCG 15507 Query 119907 GCGAAGAATGCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAG--TGTT-TTC 119963 || ||||| || | ||||| ||||| | || || | |||||| || ||| ||| Sbjct 15508 GCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTC 15567 Query 119964 CAGTCGTCCATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCC 120023 ||||||| || ||| || |||| || | |||||| || |||||| || || ||| Sbjct 15568 CAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCC 15627 Query 120024 TTTTTATAGAGTTCCCAAA 120042 ||||| || | || ||||| Sbjct 15628 TTTTTGTACATTTGCCAAA 15646 >seq1424 Length=45752 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || || || || |||||||| || || ||||| || || || ||| |||| | | || Sbjct 13090 AATAGCTCTCGAACACGCTTGGCCCCGACACCAACAAAGATTTCATCGAATTCACTGCCA 13031 Query 11797 GAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 || | | ||| |||||| | ||| ||||||| ||||||||||| || ||||| Sbjct 13030 GACATGTAGAAGAATGGAACACCGGCCTCTCCAGCGACAGCTCGAGCGAGCAGCGTCTTT 12971 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 || |||||||| | ||| |||| || | || ||| | ||| ||||| || || Sbjct 12970 CCAGTACCAGGGGGCCCAACGAGGAGAACACCTTTGGGTAGCTTAGCACCCAAATCAGAG 12911 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 ||| || || || ||||| || || | ||||| || || |||||||| Sbjct 12910 AAGCTATCCGGGTTACGAAGGAATTCGACCACCTCCTGTAGCTCTTCCTTGGC 12858 >seq2023 Length=152745 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/230 (69%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 167536 GCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATG 167595 ||||| |||||| || || | |||||| | ||| | ||||| |||| ||||||| Sbjct 20118 GCATCAGAGCCACCGGCAAGTCGAGAACCAAAGTTACCGCTGGGCTCCAGAACATTGATG 20177 Query 167596 TTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTTT-CAGCGAGGGAAACTTC 167654 ||||| || ||| | |||| | ||||| | ||| |||| | || || || |||| Sbjct 20178 TTATTGGATCCCACAAAATCCTGGGCCAGTCCAATGATGGTTTGCTGC-AGAGAGGCTTC 20236 Query 167655 GCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTC 167714 |||||||||||| ||| || | ||| ||||| | |||| || |||||| | || Sbjct 20237 GCCGTGGTGGTAGGCAGTCAGTCCAGAGACATAACCAGCCAGCTCCACAACCT---TTTC 20293 Query 167715 ATCTTTGA----GATTCTTTTGGAAACATGAATACATAACCTTGCGTTGA 167760 || |||| | |||| || |||||||| || | ||||| || ||| Sbjct 20294 GTCCTTGACCACGTTTCTCTT-GAAACATGCGTAGAGCACCTTTCGCTGA 20342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588958662019000