Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1903 235 6e-57 seq535 116 4e-21 >seq1903 Length=20131 Score = 235 bits (260), Expect = 6e-57 Identities = 969/1507 (64%), Gaps = 46/1507 (3%) Strand=Plus/Plus Query 105895 GTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGG 105954 |||||||| | ||||| || || ||| | || | | |||||||| | |||||||| Sbjct 4140 GTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGG 4199 Query 105955 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 106014 || ||||| || || || |||| || || | ||| ||| || ||||| || || | Sbjct 4200 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTGGGCATGGGGGCGAC 4259 Query 106015 CAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA 106074 | | ||||| || | ||| | |||||||| | |||||||| ||||| || | Sbjct 4260 GAGCAAGCTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCA 4319 Query 106075 GTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGA 106132 | || || || || | ||||||| || ||||| || | || | ||| | || Sbjct 4320 CAAGTCAGAA-GGCTTGACAT-CCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGT 4377 Query 106133 GAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGG 106192 || |||| || | || |||| ||| | | | || | || | ||||||||| Sbjct 4378 GATCCCTTGAACGATTCGTAGGGACCCTCCACCTTGGCAATCTCCATGGAAGCCTCCAGG 4437 Query 106193 GATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCA 106252 | ||||| || || || |||||||| | |||| ||| || || || ||| Sbjct 4438 GCCGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCA 4497 Query 106253 AA-----TGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAA 106307 || |||| || |||| | || | || || ||||| || ||||| | ||||| Sbjct 4498 AAGGGCATGCGCAG-GGCA----AGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAA 4552 Query 106308 TAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAA 106367 |||||| ||| ||||| || || || || || || ||||| | || |||| Sbjct 4553 TAGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGACATCAA 4612 Query 106368 TGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAA 106427 ||| ||| || || | ||| | ||| |||| ||||||||| || | | | || Sbjct 4613 TGATCTTGTTAAGGTTGCGGACAACGACCTTGGTGACTTCATGAAGCTTCTTAAAGTCGT 4672 Query 106428 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 106487 | || | | | ||| || || ||||| | || ||||| ||||| || | Sbjct 4673 AGCAGCCTTCGTTGTAGTCGACGTAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCACACGG 4732 Query 106488 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCG 106547 | |||||| | |||||| | || || || || | |||||| || || | Sbjct 4733 CAACCTCATCTGGGGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGG 4792 Query 106548 TCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 106607 | |||| ||||||||||| ||||| |||||| |||||||||||||||| |||| Sbjct 4793 TTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGT 4852 Query 106608 TCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATG 106666 | || ||||| ||||| | | || || | | ||||| | || | | || ||| Sbjct 4853 TACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGCGG----ATG 4908 Query 106667 GCGTTGG---CCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC 106723 | ||| | ||||||||| ||||||||| || | ||| || |||||||| || Sbjct 4909 GTCTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATACAAGGCCTCGAACTCCTCGCC- 4967 Query 106724 ACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTC 106782 | || ||| | || || || | || || || | || | ||| | ||| || Sbjct 4968 ATAGCAGTCAGCAAGGCCAGGACATTCGTTGGGGCACATGAGCGTCCAGT--CCAAGTTC 5025 Query 106783 --CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG-GGATGAAAAGAGATCTCTACA 106839 |||||| ||||||||||| ||||| |||||||| || | | | || || || | | Sbjct 5026 TTCTCAACACGCTTCATGAAGAGGTCGGGAATCCAGAGAGCAAGGAACAAG-TCGCGAGC 5084 Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 106899 || ||||||| | || ||||| || | ||||||||||| | || || ||||| Sbjct 5085 GCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTG 5144 Query 106900 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTAC 106953 ||| ||||| || |||| || | || || ||||| ||| | |||| || Sbjct 5145 CCAGGGCTCGAGGTAGATGGCAAAAGCACC---AGGACGCTTGTTACCACCCTGATCGAC 5201 Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013 ||| | || ||| ||| || || |||||||| ||||||||||| | || ||| || Sbjct 5202 ATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTT 5261 Query 107014 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 107073 || || ||| ||| |||| | | |||| || || || ||||| || Sbjct 5262 GGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACC 5321 Query 107074 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 107133 |||| || || || ||||| | | || || |||||||||| | ||| || Sbjct 5322 AGCCATTTTGGAAATCATGGCACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATC 5381 Query 107134 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCATTGA 107192 ||||| || ||| | |||||| ||||| ||| || || || ||||| || |||| Sbjct 5382 GTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTGA 5440 Query 107193 AGA-GGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCA 107249 | | |||| || | || || ||| | | |||| ||||| || ||||||||||| Sbjct 5441 ACAGGGGTGGGGGAGGCATGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCA 5498 Query 107250 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGG 107309 |||| |||||||| || || |||||| | | ||| ||||||| ||||| || | Sbjct 5499 GGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACACCCGCATAATCATGTGCTGTG 5558 Query 107310 GTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGAC 107369 | || | | ||||||| ||| |||| || | ||| || || |||| | Sbjct 5559 GCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGTATGACCGCTCCAGAGTCTTGAAGC 5618 Query 107370 CAAAGTA 107376 ||||||| Sbjct 5619 CAAAGTA 5625 >seq535 Length=62126 Score = 116 bits (128), Expect = 4e-21 Identities = 348/526 (66%), Gaps = 17/526 (3%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| ||||||||||| || || || || || || || ||| || || Sbjct 15093 GGCAAAGTCAGTGTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 15152 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | ||| | || | | || | ||| ||||||||| Sbjct 15153 AGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 15212 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC--- 117449 ||||| || ||||| |||| ||||||| ||| ||||| ||| || |||| Sbjct 15213 GCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGA---AGAGTTCTTGTCCTG 15269 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 117509 || ||| || || ||||| | ||||| || ||| || || | || | ||||| | Sbjct 15270 AATCCACTTGATGGCCCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTT 15329 Query 117510 AAATAACT-GCTTC-TTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATAT 117567 || | | ||| | | | | || ||||| ||||| |||| || | || || Sbjct 15330 GAAGAGGTAGCTGCGCTGGCTGTTC--TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAG 15387 Query 117568 GTTTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCT 117626 || ||| || | | | ||| ||| | || | ||||||| | || || ||| Sbjct 15388 GTCTCGGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCATCGAGCCTCGGG 15446 Query 117627 TATCTGCACTTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACC 117685 ||||| || || |||| || | | | ||||| ||||| ||||| || Sbjct 15447 GATCTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGG 15505 Query 117686 CAGCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCT 117742 | |||||||| |||||||||| ||||| | ||| || | || |||| || | | Sbjct 15506 CGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGT 15565 Query 117743 TCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 ||||||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 15566 TCCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 15611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589963432440200