Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq1667 95.1 8e-15
seq2135 89.7 3e-13
seq1790 89.7 3e-13
>seq1667
Length=31153
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831
|||||||| | ||||| || ||||| ||||| ||||| | |||| | || | || ||
Sbjct 23449 ACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCGTCTTC 23391
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|||||| || || ||||| || | || |||||||| | || | |||||||||||
Sbjct 23390 CAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 23331
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
|||||| |||||| | || | || | || || |||| ||| || || ||
Sbjct 23330 AATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTT 23271
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| ||||||||||| || || |||||||||
Sbjct 23270 GCCTGTGAGAGTCTTGACGAAAATCTGCATA 23240
Score = 93.3 bits (102), Expect = 3e-14
Identities = 139/196 (71%), Gaps = 10/196 (5%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || || |||| |||| || || || || || |||||
Sbjct 22676 TCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCAAAA 22617
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG--- 34907
|| || || |||||||| | || | ||||||||||| ||||| ||||||
Sbjct 22616 ATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTG 22557
Query 34908 --GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965
|||| ||||| || | ||| || |||| ||| ||||| || || ||||| ||||
Sbjct 22556 TCGATGGTATCG---GAC--GACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCT 22502
Query 34966 TCACAAAGATCTGCAT 34981
| || ||||| |||||
Sbjct 22501 TGACGAAGATTTGCAT 22486
Score = 93.3 bits (102), Expect = 3e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| ||||| || ||| |||| |||| || ||||| || ||||| ||
Sbjct 22975 TCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAG 22916
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || |||||||| | || | ||||||||||| ||||| ||||||
Sbjct 22915 ATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 22856
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| || | ||| | ||| || |||| ||| ||||| ||||| ||||| ||||| ||
Sbjct 22855 TCAATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGAC 22797
>seq2135
Length=79206
Score = 89.7 bits (98), Expect = 3e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||| ||||| ||||| |||||| | || |||| || ||||| || || ||||| ||
Sbjct 76470 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 76411
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
| ||| |||||||| | || | ||||||||||| ||||| ||||| |
Sbjct 76410 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 76351
Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972
|||| || || ||| || || | ||| ||||| || ||||| || |||||||| ||
Sbjct 76350 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 76292
>seq1790
Length=95376
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || ||| |||| |||| |||||||| || || || ||
Sbjct 27704 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAG 27763
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||| |||||||| | || | ||||||||||| ||||| ||||| ||
Sbjct 27764 ATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT 27821
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| || | ||| || || | ||| || || || |||||||| |||||
Sbjct 27822 --TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTT 27879
Query 34967 CACAAAGATCTGCATATT 34984
|| || |||||||| ||
Sbjct 27880 GACGAAAATCTGCATCTT 27897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324624282508440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |