Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1458 82.4 6e-11 >seq1458 Length=45513 Score = 82.4 bits (90), Expect = 6e-11 Identities = 249/383 (65%), Gaps = 14/383 (4%) Strand=Plus/Minus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || | |||||| |||||| ||||||||||||| | ||| | Sbjct 40937 TGTGGCAGGGCGGCAAGGCCATGCTCTTGAAGTCTCGCGGGTTCCAGGCGCTGAGGATCA 40878 Query 30068 TGCGCCTGTCTTCTGGGTTGTT------CCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 30121 | | || ||| | ||| |||| | || || | | |||| |||||| | Sbjct 40877 TTCTCCGGTCGTAAGGGCTGTTGCGAAGCTTGTGGATGATCTCGGC------CAGCTGGT 40824 Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181 | || ||| | || | |||||| ||| | || |||||| || || || || | || Sbjct 40823 CGACGCCCTTGCCGGCGTAGTCGGCCTTTGCATCGACGTACTCGGCGCCAAAGTGTCGCC 40764 Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241 ||||||| ||||| || || |||||||| || | || | ||| | ||| ||| Sbjct 40763 ACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACCTCGCGGTGGGTCAGGCCGACGCTGT 40704 Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301 | | || || | ||| || ||| ||||||||||||| || || ||| ||| | Sbjct 40703 CGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACGCCGACGTCGTTGAGGGCGA 40644 Query 30302 TGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30360 |||| |||| ||||| || |||||| || ||||| | | |||||| ||| Sbjct 40643 GGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAAG 40585 Query 30361 ACCCTCTTGGTCGTGAGGAGGGG 30383 |||| || || ||||| || || Sbjct 40584 ACCCGTTTTGTTGTGAGCAGCGG 40562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408605872036415