Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq1458 82.4 6e-11
>seq1458
Length=45513
Score = 82.4 bits (90), Expect = 6e-11
Identities = 249/383 (65%), Gaps = 14/383 (4%)
Strand=Plus/Minus
Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067
||||||| || || | |||||| |||||| ||||||||||||| | ||| |
Sbjct 40937 TGTGGCAGGGCGGCAAGGCCATGCTCTTGAAGTCTCGCGGGTTCCAGGCGCTGAGGATCA 40878
Query 30068 TGCGCCTGTCTTCTGGGTTGTT------CCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 30121
| | || ||| | ||| |||| | || || | | |||| |||||| |
Sbjct 40877 TTCTCCGGTCGTAAGGGCTGTTGCGAAGCTTGTGGATGATCTCGGC------CAGCTGGT 40824
Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181
| || ||| | || | |||||| ||| | || |||||| || || || || | ||
Sbjct 40823 CGACGCCCTTGCCGGCGTAGTCGGCCTTTGCATCGACGTACTCGGCGCCAAAGTGTCGCC 40764
Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241
||||||| ||||| || || |||||||| || | || | ||| | ||| |||
Sbjct 40763 ACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACCTCGCGGTGGGTCAGGCCGACGCTGT 40704
Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301
| | || || | ||| || ||| ||||||||||||| || || ||| ||| |
Sbjct 40703 CGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACGCCGACGTCGTTGAGGGCGA 40644
Query 30302 TGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30360
|||| |||| ||||| || |||||| || ||||| | | |||||| |||
Sbjct 40643 GGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAAG 40585
Query 30361 ACCCTCTTGGTCGTGAGGAGGGG 30383
|||| || || ||||| || ||
Sbjct 40584 ACCCGTTTTGTTGTGAGCAGCGG 40562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408605872036415
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |