Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1903 401 1e-106 seq535 181 2e-40 >seq1903 Length=20131 Score = 401 bits (444), Expect = 1e-106 Identities = 1223/1864 (66%), Gaps = 81/1864 (4%) Strand=Plus/Plus Query 212568 GGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCC---CTTGCCC 212624 ||| |||| || |||| ||||| || ||||||||||||||||| || || ||| | Sbjct 3814 GGAGCAGCTGCGGCCTGAGTGCGCAGGTAGTACATGCCGGTCTTGAGACCAAGCTT---C 3870 Query 212625 CAGCC-GTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTG 212683 ||||| ||| | |||||| |||| | | ||| | ||| ||| | || || Sbjct 3871 CAGCCAGTGAA-GTGCAT-GCTGGTAAT--CTTGCCC-----ATTGTGGGGTCCTTCATG 3921 Query 212684 GCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCAT 212743 || | |||||||||||| |||||| ||||| | | | ||||| ||||| Sbjct 3922 -------TGGATGTTCAGGGACTGGGACTGGTCAATGAAAGCACCACGATCAGCCGCCAT 3974 Query 212744 GTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTC 212803 | | || | | ||| || | |||||||||||||||| | | | |||| || || Sbjct 3975 CTGGACAATTTGGCGCTGAGAAATCTCCCACACGGTCTTGTACAAGGCCTTGATATCTTC 4034 Query 212804 TGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCAT 212860 |||| | |||||||||||| | || || | | ||| | | | | ||| Sbjct 4035 GGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTT---CAT 4091 Query 212861 GTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTG 212920 | | ||| ||||||||| || ||||| ||||| || |||||||| | ||| Sbjct 4092 GGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTG 4151 Query 212921 GAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTC 212980 ||| || || | || || | | |||||| | ||| |||||||||||||||| || ||| Sbjct 4152 GAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTC 4211 Query 212981 GTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTT 213040 |||||| ||||||||||| | || ||||| ||||||||||| || || || | ||||| Sbjct 4212 GTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTGGGCATGGGGGCGACGAGCAAGCTGTT 4271 Query 213041 CCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAG 213100 | ||| |||||||| ||| | | ||| |||| ||||| | |||| || Sbjct 4272 GCGCACACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAAGTCAGA-AG 4330 Query 213101 GTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCC 213160 | ||| || | ||||||||| || || | |||||| | | | || || Sbjct 4331 G--------CTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCC 4382 Query 213161 CTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGC 213220 || | | || |||||| || | | ||||||| | ||| ||| |||| |||||| || Sbjct 4383 CTTGAACGATTCGTAGGGACCCTCCACCTTGGCAATCTCCATGGAAGCCTCCAGGGCCGC 4442 Query 213221 GTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGG 213280 || |||||| || ||||| |||| | |||| |||| ||||| || ||| ||||| Sbjct 4443 GTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGG 4502 Query 213281 CATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTG 213340 ||| || | |||| | || || || |||||||| || | || || |||| ||| Sbjct 4503 CATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATAGGTCGGTG 4562 Query 213341 TCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGT 213399 | || ||| ||| |||| ||||| | || || ||||| || |||||||||| Sbjct 4563 GCGCATGTTGCTGTTGCGAGC-CTCCTGGACAGGATAGTAGTTGACATCAATGATCTTGT 4621 Query 213400 TGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGC 213459 | ||||||||| | || |||||||| | || | || | || |||||| Sbjct 4622 TAAGGTTGCGGACAACGACCTTGGTGACTTCATGAAGCTTCT------TAAAGTCGTAGC 4675 Query 213460 CCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCA 213513 || || | || | |||| ||||| | ||||| |||||| ||||| | Sbjct 4676 AGCCTTCGTTGTAGTCGACGTAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCACACGGCAA 4735 Query 213514 CCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGC 213573 |||| | | | | |||||| |||||||||||||| |||||| || |||||||| | Sbjct 4736 CCTCATCTGGGGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTC 4795 Query 213574 CCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA-ATCCTTGTAGAGCATGTAGGGGGAC 213632 ||||||||| ||||| ||| ||| | |||| |||||||||||||||| ||||| Sbjct 4796 CCAGGTTCTTTTGGTTGCTCTT-GCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTA 4854 Query 213633 CCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGC 213692 || ||||| ||||| |||| || ||| || | | || || | Sbjct 4855 CCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGCGGATGGTCTTG 4914 Query 213693 CTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG 213752 | || ||| | | |||||||| || || | | | ||| || | ||| || Sbjct 4915 CGACCACGTCCCTCCTT---CTCGTACTTCTCATACAAGGCCTCGAACTCCTCGCCATAG 4971 Query 213753 -ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGT-CATCTC 213810 | | | | || || ||||| ||| |||||||| |||||||| || | |||| Sbjct 4972 CAGTCAG-CAAGGCCAGGACATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTC 5030 Query 213811 TGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCC 213870 || | || |||||| ||||| || | ||| || || ||||| ||| | | | Sbjct 5031 A-ACACGCTTCATGAAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGA 5089 Query 213871 TCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACG 213930 ||| ||| || ||| ||||| ||||| || || ||||||| ||| |||||||| | Sbjct 5090 CCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGG 5149 Query 213931 GCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGG 213987 |||| | |||||||||||| || || || | |||| || ||||| || || |||| Sbjct 5150 GCTCGAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGG 5209 Query 213988 CCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCG 214047 | ||||||| | || || | ||| | | |||||||| |||||||| || | Sbjct 5210 CAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAG 5269 Query 214048 CTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GAGCCCTATGCCACCGGCG 214103 | || || ||||||| ||| | || ||| |||| | || || ||||| || Sbjct 5270 CAATGTAAGAGCCGGTGGCAC---GGATGC-GGTGGACGTTCAAGCCGATACCACCAGCC 5325 Query 214104 TACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCT 214163 ||||| |||||||| || | ||| || || ||| || | || || || || Sbjct 5326 ATTTTGGAAATCATGGCACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCC 5385 Query 214164 GTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG-GACGAGCCAGAGTTGAA-AA 214221 | | || | ||||||||| || |||| ||||||| | | || | |||||| | Sbjct 5386 TTCATGTCGACCAAGAAGCATGAGGACAGCT-GGGCCTGCGGGGTACCGGCGTTGAACAG 5444 Query 214222 GCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTG 214281 | |||||| ||||||| | | |||||| |||| | ||| |||| ||||||||||| Sbjct 5445 GGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACAC 5504 Query 214282 AGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCT 214341 ||||||| ||| | || || ||| | ||||||||| |||| || Sbjct 5505 GCTCAATGTCGTCTCCCCAGATGCCAACAGACACCCGCATAATCATGTGCTGTGGCCGCT 5564 Query 214342 ---CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAA 214398 | || || | | ||| || ||||| || ||||||||||||||||| |||| Sbjct 5565 CAACAATCTTGCCATCAAG---CTTCAGAAGGTATGACCGCTCCAGAGTCTTGAAGCCAA 5621 Query 214399 AGTA 214402 |||| Sbjct 5622 AGTA 5625 >seq535 Length=62126 Score = 181 bits (200), Expect = 2e-40 Identities = 556/850 (65%), Gaps = 26/850 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | || |||||||| Sbjct 14802 CTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTC 14861 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| |||||||||| | || || ||| | ||| | ||||||| Sbjct 14862 CATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCGAGAGCGACCAGCAG 14921 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | | || || || |||| ||||| | ||| ||| || ||||||||| | | || Sbjct 14922 GCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGCTGGAGTTCATGCCAAGCAAGGC 14981 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| | ||||| || | ||||||| ||| || | || || || | || | Sbjct 14982 GCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCGTCGGTGATGATGT- 15040 Query 48079 CTTAACGCGGGAC-TCTGAGGGTTTGTTGCGCA-GGTGCTTGGCAT---AG---AGCATG 48130 | ||| | ||| ||| || ||| ||| |||| | || |||| | Sbjct 15041 -----CACGGATCATCTCC----TTGCTG-GCACGGTTCTTGAGGTGAGAGTGCAGCAGG 15090 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||||||||| |||||| || || || || ||||||| ||||||| ||| ||| Sbjct 15091 CAGGCAAAGTCAGTGTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGA 15150 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||||| || | || |||| |||||| || | || || | || ||||||| Sbjct 15151 CCAGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 15210 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGT-CTGA 48309 |||||||| || || || || || || | || | || |||| |||||||| |||| Sbjct 15211 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGA 15270 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 ||||| | |||||||| ||||| || ||||| || || ||||| ||||| Sbjct 15271 -ATCCACTTGATGGCCCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTT 15329 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACAT 48429 |||||| | ||| || | ||| | ||||| || ||| | ||| | Sbjct 15330 GAAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGT 15389 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || ||||||||| ||||||||| | ||||| | Sbjct 15390 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGAT 15449 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| || || | ||| | ||| | ||| ||||| ||||| || ||||| || || || Sbjct 15450 CTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGC 15509 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATTCC 48605 ||||||||| |||| || | ||| | ||||| | | | || || |||| Sbjct 15510 AAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG-GCGGTTGTTCC 15568 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | || | || ||| ||| || | ||||| | ||||||||||| || || | Sbjct 15569 AGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCT 15628 Query 48666 TTTTGTACAT 48675 |||||||||| Sbjct 15629 TTTTGTACAT 15638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931505378003200