Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1903 291 2e-73 seq535 253 4e-62 >seq1903 Length=20131 Score = 291 bits (322), Expect = 2e-73 Identities = 860/1285 (67%), Gaps = 62/1285 (5%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAG 221477 |||||| ||||||||||| |||||||||||| |||||| || ||| | |||||||||| Sbjct 4434 CAGGGCCGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAG-CTCGCGAGCCTCGGGAG 4492 Query 221478 AAGTGAAGGGCATACGCAG--CATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 | |||||||| ||||| || ||||| ||||||| || ||||| || || | ||| Sbjct 4493 ACTCAAAGGGCATGCGCAGGGCAAG-GAAAG-CGTCGGCAAGACCCTGGACACCAACACC 4550 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 || || | ||| | | ||||| | ||| | || |||| || ||||| ||||||| Sbjct 4551 AATAGGTCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGG-ACAGGATAGTAGTTGACA 4608 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTC-TGGTG 221652 || || | ||||| ||||| | ||| ||| |||| ||| | |||| || | Sbjct 4609 TCAATGATCTTGTTAAGGTTGCG------GAC---AACGACCTTGGTGA-CTTCATGAAG 4658 Query 221653 ATTGAACACCAACTCG---CCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709 || | || ||| | ||| |||| | | || || |||| ||||| | Sbjct 4659 CTT---CTTAAAGTCGTAGCAGCCTTCGTTGTAG---TCGACGTAAGCAGGGAGGGCCAA 4712 Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA---TACTGTATGATCTCTGT 221766 ||||| ||| |||||||| ||||| || || || | |||| |||||||| || Sbjct 4713 AGAGGCCAAGTTGCACACGGCAACCTCATC--TGG-GGCACAGTACTCGATGATCTCGGT 4769 Query 221767 ACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGC 221826 ||||||||| || |||||| ||||||| || || || |||||| ||| ||| Sbjct 4770 GCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTG-CAGT 4828 Query 221827 G-TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCC 221885 | |||||||||||||| ||||| |||||||| ||| || |||| || | || Sbjct 4829 GATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACC 4888 Query 221886 AGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCGGT 221943 | || | |||| |||| | ||| | ||| | ||||| ||| || ||| Sbjct 4889 ACAGCT-TCTGAGCGCGGATGGTCTTGC-GACCACGTCCCTC---CTTCTCGTACTTCTC 4943 Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACA 222003 ||| | || |||| || || || || | ||||| ||||| | ||| || Sbjct 4944 ATACAAGGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGCCAGGACATTCGTTGGGGCA 5003 Query 222004 CATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAG 222063 ||| || |||||| | ||| | | || | || |||||||||||| || ||||| || Sbjct 5004 CATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGGTCGGGAATCCAGAG 5063 Query 222064 CGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAA 222123 || | || | || | | || ||| ||| ||||| ||| || | ||||| | Sbjct 5064 AGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAG 5123 Query 222124 AAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTT 222183 |||||||| | ||| |||||||| ||||| || |||| ||| | ||| || || ||||| Sbjct 5124 GAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAAGCACCAGGACGCTT 5183 Query 222184 GTTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCGGTACC 222241 ||| ||||||||||| | ||| ||| ||| | |||||| | ||||| | || | Sbjct 5184 GTTACCACCCTGATCGA-CAT-ATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATA 5241 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC-- 222299 | |||||||| |||||||||||| |||||| | ||| ||| | || | | Sbjct 5242 ATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCAC---GGATGCGG 5298 Query 222300 TGG-CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 ||| | || |||||||||||| || ||| || |||||||| || |||| || ||| Sbjct 5299 TGGACGTTCAAGCCGATACCACCAGCCATTTTGGAAATCATGGCACATGTCTTCAGGGTG 5358 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||| ||||| ||| || ||||| | || | || || || || |||| ||| Sbjct 5359 TCATAGATACCCTCGATACTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGG 5418 Query 222419 GATTTGGTGGAACAGGCGTTAAACA-GCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGA 222477 | | | || || |||||| |||| | ||||| ||| || || ||| | ||||| Sbjct 5419 GCCTGCGGGGTACCGGCGTTGAACAGGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGA 5478 Query 222478 CATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGC 222536 ||| || | ||| ||||| | ||| | | |||| ||| ||| || | | | | Sbjct 5479 CATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACAC 5538 Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTA 222594 | ||| ||||| ||| |||| ||| ||| || | |||| ||| ||||| Sbjct 5539 -CCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCCATCAAGCTTCAGA--AGGTA 5595 Query 222595 CGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCAC 222654 || |||||||||||||| |||||||| | | || ||||||| ||| || | Sbjct 5596 TGACCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAAT 5655 Query 222655 GGCGGCGTCCAGCTCCGACTTGTGC 222679 ||||| ||| |||||| ||||||| Sbjct 5656 GGCGGAGTCGAGCTCCTCCTTGTGC 5680 Score = 104 bits (114), Expect = 4e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| |||||| | || Sbjct 4140 GTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGG 4199 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||| | || ||||| ||||||||||| || || Sbjct 4200 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTGGGCATGGGGGCGAC 4259 Query 221236 CAGCAGACTGTTGCGCA 221252 |||| |||||||||| Sbjct 4260 GAGCAAGCTGTTGCGCA 4276 >seq535 Length=62126 Score = 253 bits (280), Expect = 4e-62 Identities = 571/857 (67%), Gaps = 24/857 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||| ||||| | ||| ||||||||||||||||||||||||| Sbjct 15647 ATTTGGCAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 15588 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| || ||| |||| || || || | | |||||| || | || || Sbjct 15587 TCCAAGGATCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 15529 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | |||| |||||||| ||||||||||| || || |||||||| ||| |||| | Sbjct 15528 TCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCG 15469 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || || ||| | ||||| || |||||||| |||||||| || Sbjct 15468 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 15409 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| || || ||| | || ||||| | || | Sbjct 15408 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAACAG 15349 Query 25773 CGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 | || | || | || || ||||| ||| ||| || |||| | ||||| Sbjct 15348 CCAGCGCAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAAAAGGCCG 15290 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||||| |||||||| | | ||| | || | |||| | |||| ||||| |||| Sbjct 15289 ACTGGGCCATCAAGTGGATTCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCT 15230 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 |||| || || ||||||||||| ||||||||| | ||||| ||||||||||| ||||| Sbjct 15229 TTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGGTCAAGA 15170 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || |||||| || ||| ||||||||||||||||||| | || ||||||| Sbjct 15169 AGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGATGAGGGTC 15110 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--TCA 26069 | |||| || |||||||||||||| || | ||| ||| | || | | | || Sbjct 15109 TGCACACTGACTTTGCCTGCCTGCTGCACTC---TCAC---CTCAAGAACCGTGCCAGCA 15056 Query 26070 A-GAGA----CCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNN 26124 | |||| |||| || ||||||| || ||||| || ||| ||||||| Sbjct 15055 AGGAGATGATCCGT-GAC---ATCATCACCGACGCTGTCCGAATTGAGCAGGAGTTCTTG 15000 Query 26125 NNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATT 26184 | ||||||||| ||| || |||| || |||||| Sbjct 14999 ACCGAGGCTCTCCCCTGCGCCTTGCTTGGCATGAACTCCAGCCTGATGAAGCAGTACATT 14940 Query 26185 GAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCT 26244 |||| ||| ||||||| |||||| | || || || | |||||| | | Sbjct 14939 GAGTTTGTTGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAAAAGGTCTACAAGTCTTCC 14880 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| || ||||| ||||| ||||| || | | || |||||||||||||| || ||| Sbjct 14879 AACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAG 14820 Query 26305 AGGGTCGGCGACTATCA 26321 | |||| |||||| || Sbjct 14819 CGCGTCGCCGACTACCA 14803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928817457131200