Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1903 223 4e-53 seq535 116 4e-21 >seq1903 Length=20131 Score = 223 bits (246), Expect = 4e-53 Identities = 1057/1654 (64%), Gaps = 54/1654 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 |||||||| |||| || || ||| | || |||| ||| ||||||| | | Sbjct 5625 TACTTTGGCTTCAAGACTCTGGAGCGGTCATACCTTCTGAAGCTTGATGGCAAGATTGTT 5566 Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 || |||||| ||||| | |||||||| | | |||||| || || |||||||| Sbjct 5565 GAGCGGCCACAGCACATGATTATGCGGGTGTCTGTTGGCATCTGGGGAGACGACATTGAG 5506 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTC--CCAAGGTATGTTCATTCACG-CAACACCA 75322 |||| ||||||||||| || ||||| |||| | |||| || | | | ||| Sbjct 5505 CGTGTCCTGGAGACATACAACCTCATGTCTAGCAAG--TTCTTCACCCATGCCTCCCCCA 5448 Query 75323 ACCCTCTTCAATGCTGGTACACC-AAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAA 75381 |||| ||||| || ||||| || || || ||| ||||| |||||| | ||| || Sbjct 5447 CCCCTGTTCAACGCCGGTACCCCGCAGGCC-CAGCTGTCCTCATGCTTCTTGGTCGACAT 5389 Query 75382 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAA 75441 ||||| || ||| | |||||||||| || || | | ||||| || || || Sbjct 5388 GAAGGACGATAGTATCGAGGGTATCTATGACACCCTGAAGACATGTGCCATGATTTCCAA 5329 Query 75442 GTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 75501 |||||| ||||| || || || |||| | | |||| ||| ||| Sbjct 5328 AATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGC 5269 Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 || || || ||| || | ||||||||||| |||||||| || || ||| ||| || Sbjct 5268 TGGCACCAACGGTACCTCCAACGGTATTATTCCCATGCTTCGAGTGTTCAACAACACTGC 5209 Query 75562 GCGCTATGTAAATCAAGCGGGGCGTCGCAAG------GGGTCCATCGCGGTCTACTTGGA 75615 | ||||| |||| ||| || |||| || | | || ||||| | || Sbjct 5208 CAGATATGTCGATCA---GGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTCGA 5152 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675 || ||||| ||||| || | ||||||||||| | || ||||| || | ||||| Sbjct 5151 GCCCTGGCACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGA 5092 Query 75676 GGCTCGGTGTAGAGATCTCTTTTCAT-CCCTGTGGATTCCAGACCTTTTCATGAAGCGGG 75734 || || | | || || || | | | || |||||||| ||||| ||||||||||| | Sbjct 5091 GGTCCGCGCTCGCGA-CTTGTTCCTTGCTCTCTGGATTCCCGACCTCTTCATGAAGCGTG 5033 Query 75735 TTGAG--GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA 75792 ||||| || ||| | ||| | || | || || || | || || || | || Sbjct 5032 TTGAGAAGAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGTCCTGGCCTTGCTGA 4975 Query 75793 C-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGG---GTAGAG 75848 | || | || |||||||| || ||| | || ||||| || |||||| || | Sbjct 4974 CTGCTAT-GGCGAGGAGTTCGAGGCCTTGTATGAGAAGTACGAGAAGGAGGGACGTGGTC 4916 Query 75849 CCAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAG 75907 ||| ||| | || | | || | | ||| | | || || || | ||||| ||| Sbjct 4915 GCAA---GACCAT-CCGCGCTCAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAG 4860 Query 75908 ACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAAT 75967 ||||| | || | ||||| ||||||||| || ||| ||||| ||||||||||| Sbjct 4859 ACTGGTAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAAC 4800 Query 75968 TTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGAT 76027 ||||||| ||| ||||| || || ||||| || || | |||||| | ||| Sbjct 4799 CTGGGAACCATCCGCAGCTCCAACCTCTGCACCGAGATCATCGAGTACTGTGCCCCAGAT 4740 Query 76028 GAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACT 76087 ||| || || ||||| ||||| || | ||||| || || ||| | | | Sbjct 4739 GAGGTTGCCGTGTGCAACTTGGCCTCTTTGGCCCTCCCTGCTTACGTCGACTACAACGAA 4680 Query 76088 CGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147 || | || | | | || ||||||||| |||| ||| | ||| | || || ||| Sbjct 4679 GGCTGCTACGACTTTAAGAAGCTTCATGAAGTCACCAAGGTCGTTGTCCGCAACCTTAAC 4620 Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACAC 76207 ||||||| || | ||||| || || || || || || ||||| ||| Sbjct 4619 AAGATCATTGATGTCAACTACTATCCTGTCCAGGAGGCTCGCAACAGCAACATGCGCCAC 4560 Query 76208 AGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA 76267 ||||||||||| | ||||| || ||||| || || | || | |||| || |||| Sbjct 4559 CGACCTATTGGTGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCT----TGCC-CTGCGCA 4505 Query 76268 -----TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATC 76322 ||||| || || || ||| |||| | |||||||| || || || | Sbjct 4504 TGCCCTTTGAGTCTCCCGAGGCTCGCGAGCTGAACAAGCAGATCTTTGAGACAATCTACC 4445 Query 76323 ACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTG 76382 |||| |||||||||| || | || | | | ||| |||| || | || Sbjct 4444 ACGCGGCCCTGGAGGCTTCCATGGAGATTGCCAAGGTGGAGGGTCCCTACGAATCGTTCA 4385 Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC 76442 |||| || || || ||| | || | || || || || ||||||| | || || || | Sbjct 4384 AGGGATCACCTGCATCCGAGGGCATCCTCCAATTCGACATGTGGG-ATGTCAAGCC-TTC 4327 Query 76443 T--CAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 76500 | | | || ||||| |||||||| | ||||||||| | ||| | || ||||| Sbjct 4326 TGACTTGTGGGAGTGGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAG 4267 Query 76501 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 76560 | | | || || ||||| || ||| ||| | || || |||| || || || || Sbjct 4266 CTTGCTCGTCGCCCCCATGCCCACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTG 4207 Query 76561 CTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCAT 76620 ||| || || ||||| | |||||||||| | || | ||| || || ||||| | Sbjct 4206 CTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGT 4147 Query 76621 TGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAA 76680 ||||||| || |||| ||||| | | || ||||||||| | | ||||| Sbjct 4146 TGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACCGGCCTCTGGTCCGATGCCATGAA 4087 Query 76681 GGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATG 76736 | | | ||| || ||| | | || |||||||| || ||| | | ||||| || | Sbjct 4086 GAACCGTATCATTGCTGAGAAC----GGCTCCATTCAGAACATCCCCAACATCCCCGAAG 4031 Query 76737 ATATCAAGAATCTCTACCGCACAGTGTGGGAAAT 76770 |||||||| | ||| || |||||||| || Sbjct 4030 ATATCAAGGCCTTGTACAAGACCGTGTGGGAGAT 3997 >seq535 Length=62126 Score = 116 bits (128), Expect = 4e-21 Identities = 348/526 (66%), Gaps = 17/526 (3%) Strand=Plus/Minus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770 ||||| || ||||| ||||| ||||||| ||||| |||||||||| | || |||| Sbjct 15611 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 15552 Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 || | || ||| | ||||| |||||||||| |||||||| | || ||||| ||| Sbjct 15551 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 15492 Query 64831 GTTTTTGAGAATATCAATAA-CAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 || ||||| | | | || |||| || || ||||| ||| || || | Sbjct 15491 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGC-GAGGTCCAGATCCCCGAGGCTCGATG 15433 Query 64890 ATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||||| | || | ||| ||| | | | || ||| || || || | | Sbjct 15432 CTTCTACGGCT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 15374 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAA-GAAGC-AGTTATTTGAAGCCATCCAAAC 65006 | |||| ||||| ||||| || | | | | ||| | | || | ||||| | || Sbjct 15373 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 15316 Query 65007 TGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTC 65063 | || || ||| || ||||| | ||||| || || ||| || |||| || || Sbjct 15315 CATTCCTTGCATTCGCAAAAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGAACTC 15256 Query 65064 TCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGG 65123 | ||||| ||| ||||||| |||| ||||| || ||||| ||||||||| ||| Sbjct 15255 T---TCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGG 15199 Query 65124 GTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183 | || | | || | ||| | |||||||| ||||||||||| || || ||| || Sbjct 15198 TGCCTTTGCCTCCATCTTCTGGGTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTC 15139 Query 65184 AAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || || || || ||||||||||| ||| || |||||| Sbjct 15138 CAACGAGCTCATCTCTCGTGATGAGGGTCTGCACACTGACTTTGCC 15093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596552038482400