Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2190 244 1e-59 seq1667 190 3e-43 seq1790 181 1e-40 seq780 138 1e-27 seq1046 105 9e-18 >seq2190 Length=78294 Score = 244 bits (270), Expect = 1e-59 Identities = 504/739 (68%), Gaps = 13/739 (2%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363 |||||||| | || ||||| ||||| || || ||| | | | | || || ||| || Sbjct 75537 GGTATCGACCTGGGTACTACGTACTCTTGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 75479 Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423 || ||| | || ||||| || ||||| || || || |||| ||||||||| || || | Sbjct 75478 TATCATCGCCAACGACCAGGGCAACCGAACGACCCCCTCGTTCGTTGCCTTCACCGACAC 75419 Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483 || ||||| |||| ||||| || || || ||| || |||||||| || || || Sbjct 75418 CGAGCGTCTGATTGGTGATGCGGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 75359 Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543 ||| ||||| ||||| | || || ||||||||| | || | ||||| | || || Sbjct 75358 CTTCGACGCCAAGCGATTGATCGGACGCAAGTTTGCCGACTCCGAGGTCCAGGCTGACAT 75299 Query 195544 AAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGA 195603 ||| ||| | | | ||| | || | |||| ||||| | | | || || Sbjct 75298 GAAGCACTTCCCCT-TCAAGATTGTCGACAAG-GGCTCC-AAGCCCGTCGTCGAGGTCGA 75242 Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663 || | || |||||||| | || | ||||| || || || || ||| | ||| || Sbjct 75241 GTTCAAGGGCGAGAAGAAGAACTTCACCCCCGAGGAGATCTCCTCCATGATCCTGACCAA 75182 Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723 |||| |||||||| || || | | | || | || || || | || || | ||||| Sbjct 75181 GATGCGTGAGACTGCCGAGTCCTACCTCGGAACCACCGTCAACAACGCCGTCATCACTGT 75122 Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783 || || ||||||| || || || ||||| || |||||||| | | ||||| || Sbjct 75121 CCCCGCCTACTTCAACGACAGCCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGCCGG 75062 Query 195784 TCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843 || ||| || | || ||||| || || || || ||||| ||||| || || ||||| Sbjct 75061 CCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATTGCCTACGGCCTGGA 75002 Query 195844 CAAGAACAAGGACGAAGATAAA---AATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 |||||| || ||| | | | || || | ||||| ||||||||||| ||||| || Sbjct 75001 CAAGAA---GGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGTGGCGGTACCTT 74945 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 ||||||||| || || | ||||| | || || ||||| || ||| | ||||| ||||| Sbjct 74944 TGATGTCTCTCTCCTGACCATTGAGGAGGGCATCTTCGAGGTCAAGTCCACTGCCGGTGA 74885 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGT 196019 ||||| | ||||||||||||||||| |||||| || || ||||| | | || | Sbjct 74884 CACTCACTTGGGTGGTGAAGATTTCGACAACCGTCTTGTCAACCACTTTGT-TAACGAAT 74826 Query 196020 TCCGTCGAAAGAATAAGAA 196038 || || ||||| ||||| Sbjct 74825 TCAAGCGCAAGAACAAGAA 74807 >seq1667 Length=31153 Score = 190 bits (210), Expect = 3e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || || || || |||||||||||||| |||||||| Sbjct 22486 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCC 22545 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| ||| |||| | ||||| || || ||||| |||||||| || || ||| Sbjct 22546 GATACCATCGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 22605 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||||||||| || || || || ||||| || || || | || |||||| Sbjct 22606 CAGCGTCTGATTTTTGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 22665 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||||||||| || ||||| ||||| | ||||| |||||| Sbjct 22666 ATCCAGAAGGAGTCTACCCTCCACCTGGTTCTCCGCCTTCGTGGTGGT 22713 Score = 165 bits (182), Expect = 1e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || ||||| || ||||| || |||||||||||||| ||||| || || || || || Sbjct 22797 GTCAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATTGAC 22856 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| ||||||| || || ||||| || || || || || ||||| || | || Sbjct 22857 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGCTTGATC 22916 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 || || || || |||||||| ||||| || |||||| | || |||||| |||| |||||| Sbjct 22917 TTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATTCAGAAGGAG 22976 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || ||||| |||||||| || | || || |||||| Sbjct 22977 TCCACTCTCCACCTTGTCCTTCGTCTCCGTGGTGGT 23012 Score = 158 bits (174), Expect = 2e-33 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| || || || || || || || || || || |||||||||||||| || | Sbjct 23236 GTGGTATGCAGATTTTCGTCAAGACTCTCACAGGCAAGACAATCACCCTCGAGGTGGAAT 23295 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| |||| |||||||||| || ||||| |||||||| || | Sbjct 23296 CTTCCGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTG 23355 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || | || ||||||||||| ||||| ||||| || || ||| | || | Sbjct 23356 ACCAGCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACT 23415 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||| | || |||||| || || ||| | || || | ||||| ||||| Sbjct 23416 ACAACATCCAGAAGGAGAGCACGCTGCACTTGGTGCTTCGTCTTCGTGGTGG 23467 Score = 154 bits (170), Expect = 2e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || || | || || || || ||||| | |||||||||| Sbjct 23008 GTGGTATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAGT 23067 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | |||||||| ||||| || |||| | |||||||| || ||||| || || || || | Sbjct 23068 CATCAGACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCGG 23127 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 ||||||| || || || ||||||||||| ||||| || || || || || | || | Sbjct 23128 ATCAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGTCGCACTTTGAGCGACT 23187 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| ||||||||||| || || |||||||| || | || || |||||| Sbjct 23188 ACAACATTCAAAAGGAGAGCACACTTCACCTTGTCCTCCGTCTGCGTGGTGGT 23240 >seq1790 Length=95376 Score = 181 bits (200), Expect = 1e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || |||||||| ||||| ||||| || Sbjct 27894 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 27835 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| |||||||| || || ||| Sbjct 27834 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 27775 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | || || |||||||| ||||| || ||||| || |||||| | || |||||| Sbjct 27774 CAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTACAAC 27715 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | || ||||||||||| || ||||| || || | || || |||||||| Sbjct 27714 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTGC 27665 >seq780 Length=56788 Score = 138 bits (152), Expect = 1e-27 Identities = 471/724 (65%), Gaps = 19/724 (3%) Strand=Plus/Plus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| || || ||||||| || || || ||||| || ||||| |||| ||| ||| Sbjct 52574 ACTGTCCCCGCCTACTTCAACGACAACCAGCGTCAGGCTACCAAGGATGCTGGTGCCATT 52633 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || || || ||| || | || ||||| || || || || || || || || || ||| Sbjct 52634 GCTGGCCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCTGCCGCTATCGCCTACGGT 52693 Query 195839 CTGGA--CAAG-AACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 |||| | | || | ||| | || || || |||||| ||||| ||||||||| Sbjct 52694 CTGGGTGCTGGTAAGACTGACAAGGAGCGCAACGTCCTGATCTACGATCTTGGTGGTGGT 52753 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || |||||||| || ||||| || | |||||| | ||| || |||||||| ||| Sbjct 52754 ACTTTCGATGTCTCCCTGCTCAACATCCAGGGTGGTGTCTTCACCGTCAAGGCTACCGCT 52813 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG-A 196014 ||||| || || | ||||| | || || || | | | | | | | || | | Sbjct 52814 GGTGACACCCACTTGGGTGGCCAGGACTTTGACAC-CAACCTGTTGGACCACTGCAAGAA 52872 Query 196015 TGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAA--ATCCTAGGGCTCTTCGTCGG 196072 |||||| || |||| ||||| | | | | || | || | ||||| || | Sbjct 52873 GGAGTTCACCCGCAAGAGCAAGAAGG--ACCCCAGCAACGACCCCCGTGCTCTCCGAAGA 52930 Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTCAAACAATGG 196130 || | ||||| || || |||||||| || || ||||| | || || || | | Sbjct 52931 CTCCGCACTGCTTGCGAGCGTGCCAAGCGTACCCTCTC--CAGCGGTGCCCAGGCCACCA 52988 Query 196131 TTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTT 196190 |||||||||| || | || || || |||||| | || || |||||||| |||| Sbjct 52989 TTGAGATTGACTCTCTCTTCGAGGGTGAGGACTTCACCATGACCATCACCCGTGCTCGTT 53048 Query 196191 TTGAAGAGTTAAACTC---TGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTAC 196247 | || ||| | ||| | | || | | | | | | || ||||||| || || | Sbjct 53049 TCGAGGAGCTCAACGCCAAGGCCTTCTCTGGCA---CTCTCGAGCCTGTTGCTCAGGTCC 53105 Query 196248 TTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAA 196307 | || || || || ||| || || || |||||||| || || || || | Sbjct 53106 TCAAGGATGCCGCTATCGAGAAGAGCGCCGTCGAGGAGATTGTCCTGGTCGGTGGTTCTA 53165 Query 196308 CCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACA 196367 ||||||| || ||||| || || | || || |||||| | || | | | | Sbjct 53166 CCCGTATCCCCAAGATCCAGAAGCTTCTGTCCGAGTTCTTCGACGGCAAGAAGCTCGAGA 53225 Query 196368 AAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCT 196427 | | |||||||| ||||| || ||||| || ||||| ||||| ||||| | ||| |||| Sbjct 53226 AGAGCATCAACCCCGATGAGGCCGTTGCCTACGGTGCTGCCGTCCAGGCCGGTATCCTCT 53285 Query 196428 CAGG 196431 | || Sbjct 53286 CCGG 53289 >seq1046 Length=51196 Score = 105 bits (116), Expect = 9e-18 Identities = 171/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 ||||| ||||| || |||||||| | | ||||| ||| | ||| || |||| || Sbjct 27634 CAACGTCAGGCCACCAAGGACGCCGGTATCATTGCCGGTTTGAACGTCCTCCGAATCGTC 27693 Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA 195865 || || || || || || || ||||| || ||||||||||||| | | | || || | Sbjct 27694 AACGAGCCCACCGCCGCCGCTATTGCCTACGGTCTGGACAAGACCGATGGCG-AGCGCCA 27752 Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 || |||| ||| ||||| ||||||||||| |||||||| || || || || || Sbjct 27753 GAT-CATTG-TCTACGATCTTGGTGGTGGTACCTTTGATGTTTCTCTCCTGTCCATCGAC 27810 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 ||| | ||||| || |||||| || ||||| || || || |||||||| || || Sbjct 27811 AACGGTGTCTTCGAGGTCTTGGCTACCGCCGGTGACACCCACCTTGGTGGTGAGGACTTT 27870 Query 195986 GA 195987 || Sbjct 27871 GA 27872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657843034175600