Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1626 127 6e-24
seq535 122 3e-22
seq1903 86.0 2e-11
seq2251 84.2 6e-11
>seq1626
Length=34239
Score = 127 bits (140), Expect = 6e-24
Identities = 205/295 (69%), Gaps = 0/295 (0%)
Strand=Plus/Plus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
||||||| ||||| | ||| | |||||||||||| ||| | ||| || || ||
Sbjct 17911 TCTTCCAGGGCCTTGACCAGACGTCTCTGAATATAACCGGTTTCGGCTGTCTTGACGGCA 17970
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691
|||||||| ||||| |||||||| |||| || |||||||| | ||| ||| ||
Sbjct 17971 GTATCAATGAGACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCGGAAGGTGTGAGA 18030
Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751
|| | | | || |||| || || ||||| |||||||| || | || ||||||
Sbjct 18031 CCACGGAGGTAAGAATTCTCGACAAAGCCACGAGCCTCGGGTGAGTAATCATCCTTGGTG 18090
Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811
|| || || ||||| | || | |||| |||| ||||||||||| ||||| |||||
Sbjct 18091 AAATGAGGGAGGGTTCGGTATTTGAAGCCAAATGGAATACGCTTTCCTTCAACAATCTGC 18150
Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866
||||| | || ||||||| ||||| || | |||||||||||||
Sbjct 18151 TGTCCGACAAGCGCCGTCATCTGAGAAATGTTGATGGACGATCCCTTGGAGCCAG 18205
>seq535
Length=62126
Score = 122 bits (134), Expect = 3e-22
Identities = 243/355 (68%), Gaps = 4/355 (1%)
Strand=Plus/Minus
Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364
|||| || || ||| || || | ||||| |||||| || ||||| || || |
Sbjct 15445 CCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 15386
Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA-CAAACTATTCAAC 133423
| || || || || || |||||||| || | | |||| ||| | | || ||||||
Sbjct 15385 ACTCCCTGCTCATCGACACCTACATCAAGGAGAACAGCCAGC-GCAGCTACCTCTTCAAC 15327
Query 133424 GCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482
|||||| | || ||||||| ||| || || | |||||||| || || ||||| ||
Sbjct 15326 GCCATT-GAGACCATTCCTTGCATTCGCAAAAAGGCCGACTGGGCCATCAAGTGGATTCA 15268
Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542
||||||| | ||||| || || ||||| ||||| | || |||||||| ||
Sbjct 15267 GGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTT 15208
Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602
||||| ||||| || ||| || || ||| | || ||||| ||| | | ||||| ||
Sbjct 15207 CTTCAGCGGTGCCTTTGCCTCCATCTTCTGGGTCAAGAAGCGAGGTCTCATGCCTGGTCT 15148
Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
| ||||| ||||| || || || | || |||| || ||||| || ||||||
Sbjct 15147 GACCTTTTCCAACGAGCTCATCTCTCGTGATGAGGGTCTGCACACTGACTTTGCC 15093
>seq1903
Length=20131
Score = 86.0 bits (94), Expect = 2e-11
Identities = 341/535 (64%), Gaps = 4/535 (1%)
Strand=Plus/Plus
Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028
||| || | |||||| ||||| || || || | ||| || | || | || ||
Sbjct 5091 CTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGG 5150
Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGC 156085
||| || || || |||||| |||| | |||| ||||||||||| ||||| | ||
Sbjct 5151 CTCGAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGC 5210
Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145
||| || ||||| || | ||||| ||||||||||| ||||| || || ||||| ||
Sbjct 5211 AGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGC 5270
Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205
||| | || || | | || | || | | | || |||||||| | | |||
Sbjct 5271 AATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATTTT 5330
Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265
||||| || ||| ||| | || | | ||||| || ||| ||| || | |||
Sbjct 5331 GGAAATCATGGCACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCAT 5390
Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATA-GTGTAG 156324
| | |||| || | || | | || || || |||||||| | | || |
Sbjct 5391 GTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGGTGG 5450
Query 156325 GTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAA 156384
| | ||||| | || |||| ||||||| | |||||||||| | |||||
Sbjct 5451 GGGAGGCATGGGTGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAA 5510
Query 156385 GATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAA 156444
| || || | | ||| |||| ||| ||| ||||| || ||||| ||||
Sbjct 5511 TGTCGTCTCCCCAGATGCCAACAGACACCCGCATAATCATGTGCTGTGGCCGCTCAACAA 5570
Query 156445 TCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
|| ||||||| ||||||||||| || |||||||| || || || || ||
Sbjct 5571 TCTTGCCATCAAGCTTCAGAAGGTATGACCGCTCCAGAGTCTTGAAGCCAAAGTA 5625
>seq2251
Length=10920
Score = 84.2 bits (92), Expect = 6e-11
Identities = 110/150 (73%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| ||||| |||||||| ||||| || || || |||||||||||||| || | |
Sbjct 4644 TGAGCGATTGTCATACGGGATGGAATGGCGTGAGGGTTGATGATGATGTCTGGAGTGACA 4585
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957
|| || || |||||||| |||| || || ||| | |||||||| ||||||||
Sbjct 4584 CCTTCTCTTGTAAAGGGCATGTCCTCTTG-TCGGTAAGTAACACCAATAGTGCCCTTTTG 4526
Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||||| |||||| || |||||
Sbjct 4525 ACCGTGACGAGAGGCGAACTTGTCTCCAAT 4496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471773190203635
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |