Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1626 127 6e-24 seq535 122 3e-22 seq1903 86.0 2e-11 seq2251 84.2 6e-11 >seq1626 Length=34239 Score = 127 bits (140), Expect = 6e-24 Identities = 205/295 (69%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| ||||| | ||| | |||||||||||| ||| | ||| || || || Sbjct 17911 TCTTCCAGGGCCTTGACCAGACGTCTCTGAATATAACCGGTTTCGGCTGTCTTGACGGCA 17970 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| |||||||| |||| || |||||||| | ||| ||| || Sbjct 17971 GTATCAATGAGACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCGGAAGGTGTGAGA 18030 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | | | || |||| || || ||||| |||||||| || | || |||||| Sbjct 18031 CCACGGAGGTAAGAATTCTCGACAAAGCCACGAGCCTCGGGTGAGTAATCATCCTTGGTG 18090 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || ||||| | || | |||| |||| ||||||||||| ||||| ||||| Sbjct 18091 AAATGAGGGAGGGTTCGGTATTTGAAGCCAAATGGAATACGCTTTCCTTCAACAATCTGC 18150 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866 ||||| | || ||||||| ||||| || | ||||||||||||| Sbjct 18151 TGTCCGACAAGCGCCGTCATCTGAGAAATGTTGATGGACGATCCCTTGGAGCCAG 18205 >seq535 Length=62126 Score = 122 bits (134), Expect = 3e-22 Identities = 243/355 (68%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| || || | ||||| |||||| || ||||| || || | Sbjct 15445 CCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 15386 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA-CAAACTATTCAAC 133423 | || || || || || |||||||| || | | |||| ||| | | || |||||| Sbjct 15385 ACTCCCTGCTCATCGACACCTACATCAAGGAGAACAGCCAGC-GCAGCTACCTCTTCAAC 15327 Query 133424 GCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482 |||||| | || ||||||| ||| || || | |||||||| || || ||||| || Sbjct 15326 GCCATT-GAGACCATTCCTTGCATTCGCAAAAAGGCCGACTGGGCCATCAAGTGGATTCA 15268 Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542 ||||||| | ||||| || || ||||| ||||| | || |||||||| || Sbjct 15267 GGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTT 15208 Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||||| ||||| || ||| || || ||| | || ||||| ||| | | ||||| || Sbjct 15207 CTTCAGCGGTGCCTTTGCCTCCATCTTCTGGGTCAAGAAGCGAGGTCTCATGCCTGGTCT 15148 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||| ||||| || || || | || |||| || ||||| || |||||| Sbjct 15147 GACCTTTTCCAACGAGCTCATCTCTCGTGATGAGGGTCTGCACACTGACTTTGCC 15093 >seq1903 Length=20131 Score = 86.0 bits (94), Expect = 2e-11 Identities = 341/535 (64%), Gaps = 4/535 (1%) Strand=Plus/Plus Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 ||| || | |||||| ||||| || || || | ||| || | || | || || Sbjct 5091 CTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGG 5150 Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGC 156085 ||| || || || |||||| |||| | |||| ||||||||||| ||||| | || Sbjct 5151 CTCGAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGC 5210 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145 ||| || ||||| || | ||||| ||||||||||| ||||| || || ||||| || Sbjct 5211 AGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGC 5270 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205 ||| | || || | | || | || | | | || |||||||| | | ||| Sbjct 5271 AATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATTTT 5330 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| || ||| ||| | || | | ||||| || ||| ||| || | ||| Sbjct 5331 GGAAATCATGGCACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCAT 5390 Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATA-GTGTAG 156324 | | |||| || | || | | || || || |||||||| | | || | Sbjct 5391 GTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGGTGG 5450 Query 156325 GTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAA 156384 | | ||||| | || |||| ||||||| | |||||||||| | ||||| Sbjct 5451 GGGAGGCATGGGTGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAA 5510 Query 156385 GATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAA 156444 | || || | | ||| |||| ||| ||| ||||| || ||||| |||| Sbjct 5511 TGTCGTCTCCCCAGATGCCAACAGACACCCGCATAATCATGTGCTGTGGCCGCTCAACAA 5570 Query 156445 TCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||||| ||||||||||| || |||||||| || || || || || Sbjct 5571 TCTTGCCATCAAGCTTCAGAAGGTATGACCGCTCCAGAGTCTTGAAGCCAAAGTA 5625 >seq2251 Length=10920 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || ||||| |||||||| ||||| || || || |||||||||||||| || | | Sbjct 4644 TGAGCGATTGTCATACGGGATGGAATGGCGTGAGGGTTGATGATGATGTCTGGAGTGACA 4585 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || || |||||||| |||| || || ||| | |||||||| |||||||| Sbjct 4584 CCTTCTCTTGTAAAGGGCATGTCCTCTTG-TCGGTAAGTAACACCAATAGTGCCCTTTTG 4526 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||| |||||| || ||||| Sbjct 4525 ACCGTGACGAGAGGCGAACTTGTCTCCAAT 4496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471773190203635