Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq535 138 1e-26
seq1903 116 5e-20
seq1570 111 2e-18
seq757 109 7e-18
seq2001 89.7 6e-12
>seq535
Length=62126
Score = 138 bits (152), Expect = 1e-26
Identities = 231/321 (72%), Gaps = 21/321 (7%)
Strand=Plus/Plus
Query 869150 GCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTA 869209
||||| | ||||||| || | ||| ||| || || ||| ||| | |||||| |
Sbjct 15086 GCAGGCA-GGCAAAGT---CAGTGTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAA 15141
Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGC-C 869268
|||| || || |||||||| || |||||||||| ||| ||||||| | | || || |
Sbjct 15142 AAGGTCAGACCAGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAG--GCAAAGGCAC 15199
Query 869269 CGA-GAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGA 869327
|| ||| |||||||||||||||||||||||| | | || |||| ||||||| | ||
Sbjct 15200 CGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAG--GAAGA 15257
Query 869328 GGCCCTCCTTGT--TG-ATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCA 869384
| | ||||| || |||||||| || ||||||||||||||||| | | | || |
Sbjct 15258 G----TTCTTGTCCTGAATCCACTTGATGGCCCAGTCGGCCTTTTTGCGAATGCAAGGAA 15313
Query 869385 CCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCG-GGTCCTTGACATAGGTGTC 869442
|| || |||||| ||||||| | | | | ||| | ||||||| ||||||||
Sbjct 15314 TGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCT--GGCTGTTCTCCTTGATGTAGGTGTC 15371
Query 869443 GATCAGGAGCGAATAGGTCTC 869463
||| || || || ||||||||
Sbjct 15372 GATGAGCAGGGAGTAGGTCTC 15392
Score = 125 bits (138), Expect = 9e-23
Identities = 173/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | |||||| |||||| |||||||||||||| |||| || ||
Sbjct 14797 GCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATG 14856
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | || ||||||| | ||||||| ||||||| ||||| | |
Sbjct 14857 TTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCGAGAGCGACC 14916
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|||||||||||||| |||||||| |||||||| ||| |||| || ||||||||| |
Sbjct 14917 AGCAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGCTGGAGTTCATGCCAAGC 14976
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
| || || || | |||| ||| ||||| | ||| || ||| || ||| ||||
Sbjct 14977 AAGGCGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCGTCGGTGATG 15036
Query 868931 AT 868932
||
Sbjct 15037 AT 15038
>seq1903
Length=20131
Score = 116 bits (128), Expect = 5e-20
Identities = 217/315 (69%), Gaps = 3/315 (1%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||| ||||| || | || |||| ||| || || || |||||||| | | ||||||||
Sbjct 5193 CTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGA 5252
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||||||||| || | ||| | ||||| ||| || | ||| || |||||
Sbjct 5253 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCC 5312
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243
||| || || ||| ||||| || | || || ||| || || ||||| ||||| ||||
Sbjct 5313 GATACCACCAGCCATTTTGGAAATCATGGCACA-TGTCTTCAGGGTGTCATAGATACCCT 5371
Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303
|||| ||| |||||||||| || | ||||| || || || | |||| || |
Sbjct 5372 CGATACTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTAC 5431
Query 1630304 CGGCGTTGAAGA-GCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAG 1630362
|||||||||| | | ||||| | || |||||| |||| | |||||| || |||
Sbjct 5432 CGGCGTTGAACAGGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACATGAGGTTGTAT 5491
Query 1630363 GTGGCGAGCACGCGC 1630377
|| | || || |||
Sbjct 5492 GTCTCCAGGACACGC 5506
>seq1570
Length=38833
Score = 111 bits (122), Expect = 2e-18
Identities = 103/131 (79%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417
||||| ||||| |||||||||| || ||| ||| ||||| ||||||||||| || ||
Sbjct 9834 CCGCGCCCCTCCCACGCCGACTGGACGTACCTGGAAAAGTATGGCATCAAGGCCTCCTCT 9893
Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477
||||| |||||| |||||||||||| | ||||| ||||||||||| || |||
Sbjct 9894 GGCGGCGGCCGGAGCAGCGCCCGCGAGACCATTGCCCGCGTGGCCGCCGGCGCTGTTGCC 9953
Query 18478 GAGAAATGGCT 18488
||||| |||||
Sbjct 9954 GAGAAGTGGCT 9964
Score = 104 bits (114), Expect = 3e-16
Identities = 77/90 (86%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154
||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct 10257 GGCCTCGGCGAGCCGTGCTTTGACAAGCTTGAGGCTCTCCTCGCCCACGCCATCATGTCG 10316
Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184
|| || || || ||||| ||||||||||||
Sbjct 10317 ATTCCTGCTACAAAGGGCTTCGAGATTGGC 10346
>seq757
Length=57168
Score = 109 bits (120), Expect = 7e-18
Identities = 86/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||| | ||| ||||| ||||| || | ||| |||| |||||| | ||||| |||||||
Sbjct 5991 CCAATTTCCTTGACATTAAGCCGCTCTTGGATGTTGGCTGCAAGACCGTGGCGAACATGA 5932
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||||||| ||||| |||||||||||||| || |||||
Sbjct 5931 TCAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACATTCAACAT 5889
>seq2001
Length=83855
Score = 89.7 bits (98), Expect = 6e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 344182 GTGGCCTTCCCCACCGAGACCGTCTACGGCCTCGGCGCCGACGCCACGTCTGACGAGGCC 344241
||||| ||||| || ||||| ||||||||||||||||||||||| ||| || ||
Sbjct 2131 GTGGCTTTCCCTACGGAGACGGTCTACGGCCTCGGCGCCGACGCAACGCGCAGCGGCTCC 2190
Query 344242 GTGCGGCGCATCTTTGAGGTCAAGGGCCGACCCTCCAACAACCCGATCATTGTGCACGTG 344301
|| | ||||||| | | |||||||| || || |||||||| | |||||||||||
Sbjct 2191 GTCAAGGGCATCTTCGCCGCAAAGGGCCGGCCGTCGGACAACCCGCTGATTGTGCACGTT 2250
Query 344302 GC 344303
||
Sbjct 2251 GC 2252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106945937671535
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |