Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq535 138 1e-26 seq1903 116 5e-20 seq1570 111 2e-18 seq757 109 7e-18 seq2001 89.7 6e-12 >seq535 Length=62126 Score = 138 bits (152), Expect = 1e-26 Identities = 231/321 (72%), Gaps = 21/321 (7%) Strand=Plus/Plus Query 869150 GCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTA 869209 ||||| | ||||||| || | ||| ||| || || ||| ||| | |||||| | Sbjct 15086 GCAGGCA-GGCAAAGT---CAGTGTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAA 15141 Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGC-C 869268 |||| || || |||||||| || |||||||||| ||| ||||||| | | || || | Sbjct 15142 AAGGTCAGACCAGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAG--GCAAAGGCAC 15199 Query 869269 CGA-GAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGA 869327 || ||| |||||||||||||||||||||||| | | || |||| ||||||| | || Sbjct 15200 CGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAG--GAAGA 15257 Query 869328 GGCCCTCCTTGT--TG-ATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCA 869384 | | ||||| || |||||||| || ||||||||||||||||| | | | || | Sbjct 15258 G----TTCTTGTCCTGAATCCACTTGATGGCCCAGTCGGCCTTTTTGCGAATGCAAGGAA 15313 Query 869385 CCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCG-GGTCCTTGACATAGGTGTC 869442 || || |||||| ||||||| | | | | ||| | ||||||| |||||||| Sbjct 15314 TGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCT--GGCTGTTCTCCTTGATGTAGGTGTC 15371 Query 869443 GATCAGGAGCGAATAGGTCTC 869463 ||| || || || |||||||| Sbjct 15372 GATGAGCAGGGAGTAGGTCTC 15392 Score = 125 bits (138), Expect = 9e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | |||||| |||||| |||||||||||||| |||| || || Sbjct 14797 GCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATG 14856 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || ||||||| | ||||||| ||||||| ||||| | | Sbjct 14857 TTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCGAGAGCGACC 14916 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||||||||||||| |||||||| |||||||| ||| |||| || ||||||||| | Sbjct 14917 AGCAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGCTGGAGTTCATGCCAAGC 14976 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 | || || || | |||| ||| ||||| | ||| || ||| || ||| |||| Sbjct 14977 AAGGCGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCGTCGGTGATG 15036 Query 868931 AT 868932 || Sbjct 15037 AT 15038 >seq1903 Length=20131 Score = 116 bits (128), Expect = 5e-20 Identities = 217/315 (69%), Gaps = 3/315 (1%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| ||||| || | || |||| ||| || || || |||||||| | | |||||||| Sbjct 5193 CTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGA 5252 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||| | ||||| ||| || | ||| || ||||| Sbjct 5253 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCC 5312 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243 ||| || || ||| ||||| || | || || ||| || || ||||| ||||| |||| Sbjct 5313 GATACCACCAGCCATTTTGGAAATCATGGCACA-TGTCTTCAGGGTGTCATAGATACCCT 5371 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 |||| ||| |||||||||| || | ||||| || || || | |||| || | Sbjct 5372 CGATACTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTAC 5431 Query 1630304 CGGCGTTGAAGA-GCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAG 1630362 |||||||||| | | ||||| | || |||||| |||| | |||||| || ||| Sbjct 5432 CGGCGTTGAACAGGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACATGAGGTTGTAT 5491 Query 1630363 GTGGCGAGCACGCGC 1630377 || | || || ||| Sbjct 5492 GTCTCCAGGACACGC 5506 >seq1570 Length=38833 Score = 111 bits (122), Expect = 2e-18 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 ||||| ||||| |||||||||| || ||| ||| ||||| ||||||||||| || || Sbjct 9834 CCGCGCCCCTCCCACGCCGACTGGACGTACCTGGAAAAGTATGGCATCAAGGCCTCCTCT 9893 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 ||||| |||||| |||||||||||| | ||||| ||||||||||| || ||| Sbjct 9894 GGCGGCGGCCGGAGCAGCGCCCGCGAGACCATTGCCCGCGTGGCCGCCGGCGCTGTTGCC 9953 Query 18478 GAGAAATGGCT 18488 ||||| ||||| Sbjct 9954 GAGAAGTGGCT 9964 Score = 104 bits (114), Expect = 3e-16 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 ||||||||||||||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct 10257 GGCCTCGGCGAGCCGTGCTTTGACAAGCTTGAGGCTCTCCTCGCCCACGCCATCATGTCG 10316 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 || || || || ||||| |||||||||||| Sbjct 10317 ATTCCTGCTACAAAGGGCTTCGAGATTGGC 10346 >seq757 Length=57168 Score = 109 bits (120), Expect = 7e-18 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||| | ||| ||||| ||||| || | ||| |||| |||||| | ||||| ||||||| Sbjct 5991 CCAATTTCCTTGACATTAAGCCGCTCTTGGATGTTGGCTGCAAGACCGTGGCGAACATGA 5932 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||| ||||| |||||||||||||| || ||||| Sbjct 5931 TCAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACATTCAACAT 5889 >seq2001 Length=83855 Score = 89.7 bits (98), Expect = 6e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 344182 GTGGCCTTCCCCACCGAGACCGTCTACGGCCTCGGCGCCGACGCCACGTCTGACGAGGCC 344241 ||||| ||||| || ||||| ||||||||||||||||||||||| ||| || || Sbjct 2131 GTGGCTTTCCCTACGGAGACGGTCTACGGCCTCGGCGCCGACGCAACGCGCAGCGGCTCC 2190 Query 344242 GTGCGGCGCATCTTTGAGGTCAAGGGCCGACCCTCCAACAACCCGATCATTGTGCACGTG 344301 || | ||||||| | | |||||||| || || |||||||| | ||||||||||| Sbjct 2191 GTCAAGGGCATCTTCGCCGCAAAGGGCCGGCCGTCGGACAACCCGCTGATTGTGCACGTT 2250 Query 344302 GC 344303 || Sbjct 2251 GC 2252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106945937671535