Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1903 188 6e-43 seq1790 100 3e-16 seq1667 87.8 2e-12 >seq1903 Length=20131 Score = 188 bits (208), Expect = 6e-43 Identities = 1055/1669 (63%), Gaps = 45/1669 (3%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTGTTGCAATATTTTGA 138417 |||||||||||||||||||| | | |||| | || || | | || || ||| Sbjct 3997 ATCTCCCACACGGTCTTGTACAAGGCCTTGATATCTTCGGGGATGTTGGGGATGTTCTGA 4056 Query 138418 ATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTT- 138476 ||| ||||| | |||||||| || || ||||| ||||| | |||| | | Sbjct 4057 ATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATGGCATCG--GACCAGAGGCCGGTGT 4114 Query 138477 -GATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535 || || ||| || | || | ||| | ||||| || || ||||| | || || | Sbjct 4115 CGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGTC 4174 Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595 | ||| |||||| ||| | ||||| || | |||||||| ||||||||||| | | Sbjct 4175 GCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGG 4234 Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655 | | || || |||||| || || | | || || | |||||| |||||| Sbjct 4235 TACTGGCAGTGGGCATGGGGGCGACGAGCAAGCTGTTGCGCACACCGTGCTCCTTGATCT 4294 Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||||||||||| ||| |||||||| || ||| || | |||||| ||| | | Sbjct 4295 GCTCCTTGAGCGAGTCCCACTCCCACAAGTCAGAAGGCTTGACATCCCACATGTCGAATT 4354 Query 138716 GTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCG 138775 | | || ||| ||| || || | | |||| ||||| ||| | | | | Sbjct 4355 GGAGGATGCCCTCGGATGCAGGTGATCCCTTGAACGATTCGTAGGGACCCTCCACCTTGG 4414 Query 138776 CCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGA 138835 | | ||| || ||||| || || | | ||| || || || ||||||| || | Sbjct 4415 CAATCTCCATGGAAGCCTCCAGGGCCGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCA 4474 Query 138836 GCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCC 138895 || || ||||||| ||| | |||||||| || ||| |||||||| || | Sbjct 4475 GCTCGCGAGCCTCGGGAGACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGAC 4534 Query 138896 CTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTC---G 138951 | || || || || || | ||| || ||||||| || ||| ||||| || || | Sbjct 4535 CCTGGACACCAACACCAATAGGTCGGTGGCGCA----TGTTGCTGTTGCGAGCCTCCTGG 4590 Query 138952 ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTA 139011 | |||||| ||||| ||||| ||||| ||||| | || || || || ||||| || | Sbjct 4591 ACAGGATAGTAGTTGACATCAATGATCTTGTTAAGGTTGCGGACAACGACCTTGGT-GAC 4649 Query 139012 TGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTT 139070 | | | || | | | ||| ||||| ||| |||||| ||||||| || Sbjct 4650 TTCATGAAGCTTCTTAAAGTCGTAGCAGCCTTCGTTGTAGTCGACG-------TAAGCAG 4702 Query 139071 GTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGAC 139130 | | |||| ||||| | ||||||||| || || || || ||| | | ||| |||| Sbjct 4703 GGAGGGCCAAA--GAGGCCAAGTTGCACACGGCAACCTCATCTGGGGCACAGTACTCGAT 4760 Query 139131 AATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCG 139190 || |||| || | || | ||| || || | || | ||| ||||| || || Sbjct 4761 GATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTTTGGTTGCTCTTGCG 4820 Query 139191 GTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT 139250 ||| || ||| ||||| ||||| | || | ||||| || || | || | || Sbjct 4821 GTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGAT 4880 Query 139251 GAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCGTCGCGCTCGT 139306 | | | ||| | | ||| | || ||| || || | || | || ||||| Sbjct 4881 GGAATACCACAGCTTCTGAGCGCGGATGGTCTTG-CG-AC--CACGTCCCTCCTTCTCGT 4936 Query 139307 ACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGT 139366 |||| || || | | ||||| || || ||| ||||| ||| | |||| | || Sbjct 4937 ACTTCTCATACAAGGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGCCAGGACATTCGT 4996 Query 139367 CAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAA 139426 || |||||||||| ||| | |||| || || ||| ||||||| || || |||| Sbjct 4997 TGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGGTCGGGAA 5056 Query 139427 TCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC- 139485 |||| | ||| | | ||| ||||| || |||||| || ||| || | Sbjct 5057 TCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTT--CTTGCG 5114 Query 139486 -ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC 139544 | | |||||| ||||| ||||| |||||||| || || || |||||||| | || || Sbjct 5115 GAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAAGCACC 5174 Query 139545 TTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACAT 139601 || ||| ||||| |||||||| | || ||| || ||||| || || | ||| Sbjct 5175 AGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCAT 5234 Query 139602 CGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGAC 139661 || | |||| | | || |||||||||| | ||| | | | || |||| Sbjct 5235 GGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGAT 5294 Query 139662 GTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-A 139720 | || || || | |||||| || || | | |||||| || | | | || | | | Sbjct 5295 GCGGTGGACGTTCAAGCCGATACCACCAGCCATTTTGGAAATCATGGCAC-ATGTCTTCA 5353 Query 139721 ATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAA 139780 || || || ||||| || || ||||||| ||| ||||| |||||||| || | Sbjct 5354 GGGTGTCATAGATACCCTCGATACTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACA 5413 Query 139781 GTTGCGGTAGTTTCGTGCCGGCTGCAAACA-GAGTAGGACTCGCGTGCGTGAACATTTGT 139839 | || | | || ||||| |||| | || || || || ||||| | | Sbjct 5414 GCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGGTGGGGGAGGCATGGGTGAAGAACTTG 5473 Query 139840 TTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACA 139899 | ||||| | | ||| || || | | | | | |||| || ||| ||| || ||| Sbjct 5474 CTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACA 5533 Query 139900 GAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAG- 139958 || || ||||| | ||| || || ||| || | | | ||| || | || || Sbjct 5534 GACACCCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGG 5593 Query 139959 -ATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || |||| ||| || |||||| |||||||||| |||||||| || Sbjct 5594 TATGACCG--CTCCAGAGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTC 5640 >seq1790 Length=95376 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || || || || || || || || || | | Sbjct 27895 GATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 27836 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 27835 CGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 27776 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||||||| || || || |||||||||||| ||| | | || || || || Sbjct 27775 GCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTACAA 27716 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| |||| |||| |||| || || Sbjct 27715 CATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 27668 >seq1667 Length=31153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || ||||| || ||| | || Sbjct 23241 ATGCAGATTTTCGTCAAGACTCTCACAGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 23300 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||| || || Sbjct 23301 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 23360 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || |||||||| || | | | || || || ||| Sbjct 23361 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAAC 23420 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || ||||||||| | || | || || ||| Sbjct 23421 ATCCAGAAGGAGAGCACGCTGCACTTGGTGCTTCGTCTTCGTGGTGGC 23468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449884356139400