Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq535 172 9e-37 seq757 105 1e-16 seq1903 104 4e-16 seq668 98.7 2e-14 seq2001 91.5 2e-12 >seq535 Length=62126 Score = 172 bits (190), Expect = 9e-37 Identities = 242/334 (72%), Gaps = 17/334 (5%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||| | |||||| |||| || || |||||||| || ||||| Sbjct 15111 ACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTT 15170 Query 794400 CTTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||| ||| ||||||| || || || || ||| |||||||||||||||||||| Sbjct 15171 CTTGACCCAGAAGATGGAGGCAAAGGCACCGCT---GAAGAAGATGCCCTCGACGGCGGC 15227 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT-TGTTGA-TCCACTTCATC 794514 |||| | || || |||| |||||| | | | |||| | ||| ||||||| || Sbjct 15228 AAAGGCAACCAGGCGCTGGGCAAAGG-----AAGAGTTCTTGTCCTGAATCCACTTGATG 15282 Query 794515 GCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 794574 ||||| || |||||||| | | | || | || || |||||| ||||||| | | Sbjct 15283 GCCCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG--C 15340 Query 794575 TTCTCGACCGGGTC--CTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGA 794632 | | | | | || ||||| ||||||||||||||| || ||||||||||| ||||||| Sbjct 15341 TGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGA 15400 Query 794633 TGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 |||| || || |||||||||||| || ||||| Sbjct 15401 TGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 15434 Score = 109 bits (120), Expect = 9e-18 Identities = 174/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | |||||| |||||| |||||||||||||| ||| Sbjct 14789 TGACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGA 14848 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | || ||||||| | | |||| ||| ||| |||| Sbjct 14849 GAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCGA 14908 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | |||||||||||||| || || ||||||||||| ||| ||| || ||||| Sbjct 14909 GAGCGACCAGCAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGCTGGAGTTCA 14968 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | | || ||| || | |||| | | ||||| | ||| || ||| || | Sbjct 14969 TGCCAAGCAAGGCGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCGT 15028 Query 794131 CGATGATGAT 794140 || ||||||| Sbjct 15029 CGGTGATGAT 15038 >seq757 Length=57168 Score = 105 bits (116), Expect = 1e-16 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||| | ||| ||||| ||||| ||| | ||| | || |||||||||||||| ||| | | Sbjct 5991 CCAATTTCCTTGACATTAAGCCGCTCTTGGATGTTGGCTGCAAGACCGTGGCGAACATGA 5932 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 ||||||||||||| ||||| || ||||||||||| || ||||| Sbjct 5931 TCAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACATTCAACAT 5889 >seq1903 Length=20131 Score = 104 bits (114), Expect = 4e-16 Identities = 174/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| |||||||| | || |||| ||| || || || |||||||| | || |||||||| Sbjct 5193 CTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGA 5252 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | ||| | ||| | ||| || | ||| || ||||| Sbjct 5253 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCC 5312 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| ||||| || | || || | ||||| || || ||||| ||||| Sbjct 5313 GATACCACCAGCCATTTTGGAAATCATGGCACATGTCTTCAGGGTGTCATAGATACCCTC 5372 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| || || || | ||| || || Sbjct 5373 GATACTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACC 5432 Query 2073780 GGCATTGAAGAG 2073791 ||| ||||| || Sbjct 5433 GGCGTTGAACAG 5444 >seq668 Length=128665 Score = 98.7 bits (108), Expect = 2e-14 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||||||| ||| |||||| ||| || ||| Sbjct 53884 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCATGCTTGGCCAATTCACCTGGCAG 53825 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||||| || || | ||||||||||| |||| ||| ||| |||||| || | Sbjct 53824 GATCAACCGGACAGATGTCTGGATCTCTCGGGAAGAGATTGTGGACTTCTTGTT-GTAGG 53766 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGA 1485625 | ||||| | ||||||||| ||| ||| |||| Sbjct 53765 CAGCCAGCTTGGAAGCCTCGGTGGCGACGCGCTCGA 53730 >seq2001 Length=83855 Score = 91.5 bits (100), Expect = 2e-12 Identities = 94/119 (79%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 2233096 CTTTCCC-ACCGAGACCGTCTATGGCCTCGGCGCCGACGCGGCG-TCAGACGAGGCCGTA 2233153 ||||||| || ||||| ||||| ||||||||||||||||| || ||| || |||| Sbjct 2135 CTTTCCCTACGGAGACGGTCTACGGCCTCGGCGCCGACGCAACGCGCAG-CGGCTCCGTC 2193 Query 2233154 CAGCGCATCTTTGACGCCAAGGGCCGACCGTCCAACAACCCGATCATCGTGCACGTGGC 2233212 || ||||||| | ||| |||||||| ||||| |||||||| | || |||||||| || Sbjct 2194 AAGGGCATCTTCGCCGCAAAGGGCCGGCCGTCGGACAACCCGCTGATTGTGCACGTTGC 2252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915995887908845