Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq535 172 9e-37
seq757 105 1e-16
seq1903 104 4e-16
seq668 98.7 2e-14
seq2001 91.5 2e-12
>seq535
Length=62126
Score = 172 bits (190), Expect = 9e-37
Identities = 242/334 (72%), Gaps = 17/334 (5%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| || || ||| ||| | |||||| |||| || || |||||||| || |||||
Sbjct 15111 ACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTT 15170
Query 794400 CTTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456
||||| ||| ||||||| || || || || ||| ||||||||||||||||||||
Sbjct 15171 CTTGACCCAGAAGATGGAGGCAAAGGCACCGCT---GAAGAAGATGCCCTCGACGGCGGC 15227
Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT-TGTTGA-TCCACTTCATC 794514
|||| | || || |||| |||||| | | | |||| | ||| ||||||| ||
Sbjct 15228 AAAGGCAACCAGGCGCTGGGCAAAGG-----AAGAGTTCTTGTCCTGAATCCACTTGATG 15282
Query 794515 GCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 794574
||||| || |||||||| | | | || | || || |||||| ||||||| | |
Sbjct 15283 GCCCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG--C 15340
Query 794575 TTCTCGACCGGGTC--CTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGA 794632
| | | | | || ||||| ||||||||||||||| || ||||||||||| |||||||
Sbjct 15341 TGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGA 15400
Query 794633 TGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
|||| || || |||||||||||| || |||||
Sbjct 15401 TGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 15434
Score = 109 bits (120), Expect = 9e-18
Identities = 174/250 (70%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||| | |||||| |||||| |||||||||||||| |||
Sbjct 14789 TGACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGA 14848
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| || || |||||| | || ||||||| | | |||| ||| ||| ||||
Sbjct 14849 GAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCGA 14908
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | |||||||||||||| || || ||||||||||| ||| ||| || |||||
Sbjct 14909 GAGCGACCAGCAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGCTGGAGTTCA 14968
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||| | | || ||| || | |||| | | ||||| | ||| || ||| || |
Sbjct 14969 TGCCAAGCAAGGCGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCGT 15028
Query 794131 CGATGATGAT 794140
|| |||||||
Sbjct 15029 CGGTGATGAT 15038
>seq757
Length=57168
Score = 105 bits (116), Expect = 1e-16
Identities = 85/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||| | ||| ||||| ||||| ||| | ||| | || |||||||||||||| ||| | |
Sbjct 5991 CCAATTTCCTTGACATTAAGCCGCTCTTGGATGTTGGCTGCAAGACCGTGGCGAACATGA 5932
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
||||||||||||| ||||| || ||||||||||| || |||||
Sbjct 5931 TCAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACATTCAACAT 5889
>seq1903
Length=20131
Score = 104 bits (114), Expect = 4e-16
Identities = 174/252 (69%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||| |||||||| | || |||| ||| || || || |||||||| | || ||||||||
Sbjct 5193 CTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGA 5252
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||||||||| || | ||| | ||| | ||| || | ||| || |||||
Sbjct 5253 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCC 5312
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| || || ||| ||||| || | || || | ||||| || || ||||| |||||
Sbjct 5313 GATACCACCAGCCATTTTGGAAATCATGGCACATGTCTTCAGGGTGTCATAGATACCCTC 5372
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| |||||||||| | || ||||| || || || | ||| || ||
Sbjct 5373 GATACTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACC 5432
Query 2073780 GGCATTGAAGAG 2073791
||| ||||| ||
Sbjct 5433 GGCGTTGAACAG 5444
>seq668
Length=128665
Score = 98.7 bits (108), Expect = 2e-14
Identities = 117/156 (75%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||||||||||||||| ||||| |||||||| ||| |||||| ||| || |||
Sbjct 53884 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCATGCTTGGCCAATTCACCTGGCAG 53825
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590
||||| || || | ||||||||||| |||| ||| ||| |||||| || |
Sbjct 53824 GATCAACCGGACAGATGTCTGGATCTCTCGGGAAGAGATTGTGGACTTCTTGTT-GTAGG 53766
Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGA 1485625
| ||||| | ||||||||| ||| ||| ||||
Sbjct 53765 CAGCCAGCTTGGAAGCCTCGGTGGCGACGCGCTCGA 53730
>seq2001
Length=83855
Score = 91.5 bits (100), Expect = 2e-12
Identities = 94/119 (79%), Gaps = 3/119 (3%)
Strand=Plus/Plus
Query 2233096 CTTTCCC-ACCGAGACCGTCTATGGCCTCGGCGCCGACGCGGCG-TCAGACGAGGCCGTA 2233153
||||||| || ||||| ||||| ||||||||||||||||| || ||| || ||||
Sbjct 2135 CTTTCCCTACGGAGACGGTCTACGGCCTCGGCGCCGACGCAACGCGCAG-CGGCTCCGTC 2193
Query 2233154 CAGCGCATCTTTGACGCCAAGGGCCGACCGTCCAACAACCCGATCATCGTGCACGTGGC 2233212
|| ||||||| | ||| |||||||| ||||| |||||||| | || |||||||| ||
Sbjct 2194 AAGGGCATCTTCGCCGCAAAGGGCCGGCCGTCGGACAACCCGCTGATTGTGCACGTTGC 2252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915995887908845
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |