Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1790 132 3e-26 seq1667 122 6e-23 seq2135 111 1e-19 >seq1790 Length=95376 Score = 132 bits (146), Expect = 3e-26 Identities = 161/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | ||| ||||||||| ||||| ||||| || ||| | || |||| Sbjct 27682 CAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATC 27741 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || |||||||||| ||| |||||||| | || | ||||||||||| Sbjct 27742 CTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 27801 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || | ||| || |||| ||| | Sbjct 27802 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGA 27857 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||| |||||||||||||| || || |||||||| Sbjct 27858 TCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 27894 >seq1667 Length=31153 Score = 122 bits (134), Expect = 6e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||||||||| ||||| || ||| | || |||| Sbjct 22996 AGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCC 22937 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||||| || |||||||| | || | ||||||||||| Sbjct 22936 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 22877 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| | ||| || || | ||| |||||| Sbjct 22876 TGGATCTTGGACTTGACGTTGTCAATGGTATCAGATGACTCCACCTCGAGGGTGATGGTC 22817 Query 34946 TTTCCCGTGAGGGTCTTTAC 34965 ||||| ||||||||||| || Sbjct 22816 TTTCCGGTGAGGGTCTTGAC 22797 Score = 114 bits (126), Expect = 8e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||| ||||| || || | || |||| Sbjct 22697 AGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCC 22638 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || || ||||| || |||||||| | || | ||||||||||| Sbjct 22637 TCGAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 22578 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || || | ||| |||||| Sbjct 22577 TGGATCTTAGACTTGACGTTGTCGATGGTATCGGACGACTCCACCTCGAGGGTGATGGTC 22518 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGGA 34986 || || ||||||||||| || ||||| |||||| | | ||| Sbjct 22517 TTGCCGGTGAGGGTCTTGACGAAGATTTGCATGGTGGCGGA 22477 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||||||||||||| ||||| ||||| | | |||| | || Sbjct 23452 AGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCT 23393 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || ||||||| || |||||||| | || | ||||||||||| Sbjct 23392 TCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 23333 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | || || || | ||| || ||| Sbjct 23332 TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTC 23273 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| || || |||||||| Sbjct 23272 TTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||||||||||| |||||||| ||||| | |||| | || Sbjct 23224 AGGACAAGGTGAAGTGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCC 23165 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || ||||| || | || | ||||||||||| Sbjct 23164 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCC 23105 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || ||| ||||| || | ||||| || | ||| || || | || || Sbjct 23104 TGAATCTTTGACTTGAC--AT--TGTCGATGGTGTCTGATGACTCAACCTCCAATGTGAT 23049 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || | ||||| || ||||||||||| Sbjct 23048 GGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 23013 >seq2135 Length=79206 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| |||| |||| || || ||||| || || |||| Sbjct 76472 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 76413 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||| |||||||| | || | ||||||||||| | || || ||||| Sbjct 76412 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 76353 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| |||| ||| |||||||| ||||| |||||||| || | Sbjct 76352 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 76293 Query 34968 A 34968 | Sbjct 76292 A 76292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325683452107745