Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq535 131 2e-25
seq1667 86.0 6e-12
>seq535
Length=62126
Score = 131 bits (144), Expect = 2e-25
Identities = 342/514 (67%), Gaps = 27/514 (5%)
Strand=Plus/Minus
Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820
|| ||| |||||||||||||| | |||||||| |||||||| || | ||| | | |
Sbjct 15311 CCTTGCATTCGCAAAAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGAACTCTTCC 15252
Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTT 46880
| ||| ||||| |||| || || || ||||| ||| | || || || |||
Sbjct 15251 TTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTT 15192
Query 46881 GCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAG 46940
||| |||| || | | || | ||| | ||||| || ||||| || ||||||
Sbjct 15191 GCCTCCATCTTCTGGGTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAG 15132
Query 46941 TTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT------CTATTAC--- 46991
| ||||| || || || || || ||||| |||||||| || || || | ||
Sbjct 15131 CTCATCTCTCGTGATGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCACCTC 15072
Query 46992 AAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGAGGC 47050
|||| || | | | || ||| | ||||| ||| ||| | | || ||
Sbjct 15071 AAGAACCGTGCCA----GCAA--------GGAGATGATCCGTGA-CATCATCACCGACGC 15025
Query 47051 GGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAA 47110
|| | || || ||||||| || || | ||| || ||| ||||||||| ||||||||
Sbjct 15024 TGTCCGAATTGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGCGCCTTGCTTGGCATGAA 14965
Query 47111 CGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 47169
| | ||| || ||| | || ||||||||||| || || || ||| |||| ||||
Sbjct 14964 CTC-CAGCCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTGCTGGTCGCTCTCG 14906
Query 47170 GACAACCGAAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTC 47228
| |||| ||| | | || || || || ||||| || ||| | |||||||| |||
Sbjct 14905 G-CAACGAAAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATTTCTCTC 14847
Query 47229 GAGGGCAAAACCAATTTTTTCGAGAAACGAGTCG 47262
| ||||| ||||| || |||||||| || ||||
Sbjct 14846 GGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCG 14813
>seq1667
Length=31153
Score = 86.0 bits (94), Expect = 6e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991
||| || || |||||||||||||||| ||| || ||||| ||||| ||||| | | |
Sbjct 23432 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAA 23373
Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051
||| | ||||| || || ||||| ||||| || || || ||| || || | |
Sbjct 23372 GATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 23313
Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111
|| | || |||| | ||||| |||| || | || || || || ||||| || |
Sbjct 23312 GTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTTGCCTGTGAGAGTCTTGAC 23253
Query 132112 GAAAATCTGCAT 132123
||||||||||||
Sbjct 23252 GAAAATCTGCAT 23241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476597169757800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |