Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq535 131 2e-25 seq1667 86.0 6e-12 >seq535 Length=62126 Score = 131 bits (144), Expect = 2e-25 Identities = 342/514 (67%), Gaps = 27/514 (5%) Strand=Plus/Minus Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820 || ||| |||||||||||||| | |||||||| |||||||| || | ||| | | | Sbjct 15311 CCTTGCATTCGCAAAAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGAACTCTTCC 15252 Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTT 46880 | ||| ||||| |||| || || || ||||| ||| | || || || ||| Sbjct 15251 TTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTT 15192 Query 46881 GCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAG 46940 ||| |||| || | | || | ||| | ||||| || ||||| || |||||| Sbjct 15191 GCCTCCATCTTCTGGGTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAG 15132 Query 46941 TTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT------CTATTAC--- 46991 | ||||| || || || || || ||||| |||||||| || || || | || Sbjct 15131 CTCATCTCTCGTGATGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCACCTC 15072 Query 46992 AAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGAGGC 47050 |||| || | | | || ||| | ||||| ||| ||| | | || || Sbjct 15071 AAGAACCGTGCCA----GCAA--------GGAGATGATCCGTGA-CATCATCACCGACGC 15025 Query 47051 GGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAA 47110 || | || || ||||||| || || | ||| || ||| ||||||||| |||||||| Sbjct 15024 TGTCCGAATTGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGCGCCTTGCTTGGCATGAA 14965 Query 47111 CGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 47169 | | ||| || ||| | || ||||||||||| || || || ||| |||| |||| Sbjct 14964 CTC-CAGCCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTGCTGGTCGCTCTCG 14906 Query 47170 GACAACCGAAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTC 47228 | |||| ||| | | || || || || ||||| || ||| | |||||||| ||| Sbjct 14905 G-CAACGAAAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATTTCTCTC 14847 Query 47229 GAGGGCAAAACCAATTTTTTCGAGAAACGAGTCG 47262 | ||||| ||||| || |||||||| || |||| Sbjct 14846 GGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCG 14813 >seq1667 Length=31153 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991 ||| || || |||||||||||||||| ||| || ||||| ||||| ||||| | | | Sbjct 23432 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAA 23373 Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051 ||| | ||||| || || ||||| ||||| || || || ||| || || | | Sbjct 23372 GATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 23313 Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111 || | || |||| | ||||| |||| || | || || || || ||||| || | Sbjct 23312 GTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTTGCCTGTGAGAGTCTTGAC 23253 Query 132112 GAAAATCTGCAT 132123 |||||||||||| Sbjct 23252 GAAAATCTGCAT 23241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476597169757800