Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq1458 107 2e-18
>seq1458
Length=45513
Score = 107 bits (118), Expect = 2e-18
Identities = 161/226 (71%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 147231 CAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCC-GCAGTCCACGTACCTGGCCCCAA 147289
||||||||| ||||||| ||| |||||| | | ||| || |||||| ||| ||||
Sbjct 40831 CAGCTGGTCGACGCCCTTGCCGGCGTAGTCGGCCTTTGCA-TCGACGTACTCGGCGCCAA 40773
Query 147290 AGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGC 147349
|||| | ||||||||||||||| || || |||||||||||| || | ||| | | ||
Sbjct 40772 AGTGTCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACCTCGCGGTGGGTCAGGC 40713
Query 147350 CCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGG 147409
| | | | ||| |||||| ||||||| | | |||||||||| || || | ||
Sbjct 40712 CGACGCTGTCGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACGCCGACGTCGT 40653
Query 147410 AGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455
||| | ||| ||| |||| |||||||||||| |||||
Sbjct 40652 TGAGGGCGAGGGAGGATGTGTTGCCCTCGATGAACCAGAGGAGCTC 40607
Score = 102 bits (112), Expect = 1e-16
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 146871 AATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCAC 146930
||||| |||| |||||| || || || | | ||||||| | | || | || |
Sbjct 41248 AATCTCCAGCTCGGGGAATGGCCGCGGTTCGCGCTCCAGCTGGGTCTGGAGAGCGTCGAT 41189
Query 146931 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCC 146990
||||| || ||||||||| ||||| |||| | ||| | | || ||| || |
Sbjct 41188 GTGGTCGATGTAGACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGATC 41129
Query 146991 GGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050
|||||| || | ||||| |||||||||| |||||||| ||||||||||||| ||
Sbjct 41128 ACACACGTGAGCGAGCATGTGCGTGAGCAGCGCATAGCTGGCAATGTTGAAGGGGATGCC 41069
Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086
|| |||||||| | || | |||||| ||||||||
Sbjct 41068 AAGACCCATGTCGCAGGAGCGCTGGTATAGCTGGCA 41033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583470823572000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |