Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq535 253 3e-61 seq1903 123 4e-22 >seq535 Length=62126 Score = 253 bits (280), Expect = 3e-61 Identities = 373/512 (73%), Gaps = 22/512 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| |||||||||||||||||||| ||||||||||| ||| | || | Sbjct 15648 GATTTGGCAAATGTAC-AAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATC 15590 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | ||||| ||| ||| ||| |||||| | |||||| Sbjct 15589 TGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCT 15530 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||| ||||| ||| |||||| |||||||| || ||||||||||| || Sbjct 15529 CTCACATCCTGGCCTTCTTT-GCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAG 15471 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | || ||||| || | || ||||| ||||||||| Sbjct 15470 CGCTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 15411 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG--GACC 1456069 || || ||||||||||| || |||||||| || || |||||||||||| ||||| || | Sbjct 15410 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 15351 Query 1456070 CGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | | | || | ||||||| |||||| || || | || | | | ||||||| Sbjct 15350 AGCCAGCGCAG--CTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAAAAGG 15293 Query 1456130 CCGACTGGGCGATGAAGTGGA-TCA--ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 |||||||||| || ||||||| ||| ||||| | ||| | ||||||| |||| || Sbjct 15292 CCGACTGGGCCATCAAGTGGATTCAGGACAAGAA----CTCTTC-CTTTGCCCAGCGCCT 15238 Query 1456187 CGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCATCTTT 1456243 || | |||||||| ||||||||||||||| ||| ||| || || | | ||||||| Sbjct 15237 GGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGC--CTCCATCTTC 15180 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||| || |||||||| ||||| Sbjct 15179 TGGGTCAAGAAGCGAGGTCTCATGCCTGGTCT 15148 Score = 95.1 bits (104), Expect = 2e-13 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| || ||| || ||| | ||||| | | |||| | || || || Sbjct 15038 ATCATCACCGACGCTGTCCGAATTGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGCGCC 14979 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 | | ||||||||| ||| | || ||| ||||||||||| ||| || |||||||||| Sbjct 14978 TTGCTTGGCATGAACTCCAGC-CTGATGAAGCAGTACATTGAGTTT-GTTGCCGACCGCC 14921 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || |||||| || | ||| |||| | | ||||||| || | ||| Sbjct 14920 TGCTGGTCGCTCTCGGCAACGAA-AAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATG 14862 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| || || |||| |||||||||||||| |||||| ||||| | ||| ||| Sbjct 14861 GAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCCGACTACCAG 14802 Query 1456762 AAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 14801 AAGGCTGGTGTCA 14789 >seq1903 Length=20131 Score = 123 bits (136), Expect = 4e-22 Identities = 338/508 (67%), Gaps = 26/508 (5%) Strand=Plus/Minus Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740 ||||||||||| |||||| | ||||| | ||| |||||||| |||| ||||| Sbjct 5680 GCACAAGGAGGAGCTCGACTCCGCCATTGTCTACGATCGAGACTTCAACTACCAATACTT 5621 Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAG--TGC--GCGATATTGTCGTCG 259796 ||| | ||| || ||||| ||||| | ||| || || | ||||| | Sbjct 5620 TGGCTTCAAGACTCTGGAGCGGTCATACCTT-CTGAAGCTTGATGGCAAGATTGTTG--- 5565 Query 259797 AGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCG 259856 ||||||| ||| | ||| | ||||| || | ||||| | |||| || | || Sbjct 5564 AGCGGCCACAGCACATGATTATGCGGGTGTCTGTTGGCA--TCTGGG------GA-GACG 5514 Query 259857 ACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACC 259915 ||| || ||| || || | || ||| | |||||| |||| ||| |||||| Sbjct 5513 ACATTG------AGCGTGTCCTGGAGACATACAACCTCATGTCT-AGCAAGTTCTTCACC 5461 Query 259916 TCAGCGACGCCCACGC-TCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTT 259974 || | ||||| | | || || ||||| || |||| | ||| || || ||||| Sbjct 5460 CATGCCTCCCCCACCCCTGTTCAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTT 5401 Query 259975 TCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGC 260034 || | |||||||||| |||| |||||||| ||||||||||| || ||| || || Sbjct 5400 CTTGGTCGACATGAAGGACGATAGTATCGAGGGTATCTATGACACCCTGAAGACATGTGC 5341 Query 260035 GCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGG 260094 | || ||||| ||| || || ||||| || || ||| | || ||| | || Sbjct 5340 CATGATTTCCAAAATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGG 5281 Query 260095 CGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTT 260154 | | ||| | || ||||||||||| |||||||| || | ||||||||||| || || Sbjct 5280 CTCTTACATTGCTGGCACCAACGGTACCTCCAACGGTATTATTCCCATGCTTCGAGTGTT 5221 Query 260155 TAACGACACGGCGCGCTACGTCGACCAG 260182 ||| |||| || | || ||||| ||| Sbjct 5220 CAACAACACTGCCAGATATGTCGATCAG 5193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177584055921510