Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq535 123 3e-23 seq1903 111 2e-19 >seq535 Length=62126 Score = 123 bits (136), Expect = 3e-23 Identities = 365/559 (65%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| |||||| || || |||||||| | | || | ||||| ||||| || || Sbjct 15090 GCAGGCAAAGTCAGTGTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAG 15149 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| ||||| ||||| |||| ||| || |||| ||||| | || ||||| Sbjct 15150 ACCAGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAA 15209 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCT---CTCCGTAACTTGTATCATTATG 39792 |||||| || || || ||||| ||||| || | || | | || | | | || Sbjct 15210 GATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTG 15269 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||||||| ||||| || || || || | ||||| || || || || || || Sbjct 15270 AATCCACTTGATGGCCCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTT 15329 Query 39853 AAAGAGATA-ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 ||||| || || | | | || || | || || || || | ||| || Sbjct 15330 GAAGAGGTAGCTGCGCTGGCT-GTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGG 15388 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || || |||||||| || ||| ||||| || ||||| || |||| || || | | Sbjct 15389 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGA 15448 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 | || ||||| | || | || ||| || || || || || |||||| |||| Sbjct 15449 TCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGG 15508 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCC 40088 |||| || |||| | || || || || || || || ||| || |||| Sbjct 15509 CAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCC 15568 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| | | ||| || || | ||| | ||||| || ||||| || || ||||| |||| Sbjct 15569 AGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCT 15628 Query 40149 TTTTGTACATGTTCCATAT 40167 |||||||||| | ||| || Sbjct 15629 TTTTGTACATTTGCCAAAT 15647 >seq1903 Length=20131 Score = 111 bits (122), Expect = 2e-19 Identities = 270/409 (66%), Gaps = 0/409 (0%) Strand=Plus/Plus Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 ||||||||||| || || ||||| | | ||| | | | || ||| || ||||| Sbjct 4984 CCAGGACATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATG 5043 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 || || ||||||||||| ||||| | || | || | | | ||||| || || Sbjct 5044 AAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCG 5103 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 || || ||||| || ||||| | | || | ||||| || || || || || Sbjct 5104 TGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATG 5163 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | | || || || || || || |||||||| | |||||||||||||| || | Sbjct 5164 GCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAAC 5223 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 |||| ||||| ||||||||||| || || |||| || || |||| ||| ||| || Sbjct 5224 ACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 5283 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 | || || || | | || || || || |||||||| || || | ||| Sbjct 5284 GTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATTTTGGAAATCATGGCA 5343 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGT 69955 || |||| |||||||| |||||||| || ||||| || |||||| Sbjct 5344 CATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCATGT 5392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686888579122200