Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1903 262 5e-65 seq535 118 1e-21 >seq1903 Length=20131 Score = 262 bits (290), Expect = 5e-65 Identities = 1049/1628 (64%), Gaps = 54/1628 (3%) Strand=Plus/Plus Query 110551 CTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA-TGA 110609 ||||||||| || ||||| | | ||| ||||| ||||| || | ||| || ||| Sbjct 4023 CTTGATATCTTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTC----TCAGCAATGA 4078 Query 110610 GA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCT 110666 | | |||||| | | ||||||||| || | | ||||| |||| || Sbjct 4079 TACGGTTCTTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGG 4138 Query 110667 TGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATG 110726 |||||||| ||||| || || ||| | || | |||||||||| | ||||| | Sbjct 4139 GGTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGG 4198 Query 110727 GTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCA 110786 | || ||||| || || || |||| || || | ||| ||| || ||||| || || | Sbjct 4199 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTGGGCATGGGGGCGA 4258 Query 110787 TCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGT 110846 | | ||||| || | ||| | ||||||||| | |||||||| ||||| || Sbjct 4259 CGAGCAAGCTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCC 4318 Query 110847 AGTTG--AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGG 110904 | | || || || || | |||||||||| || || || | || | ||| || || Sbjct 4319 ACAAGTCAGAA-GGCTTGACAT-CCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGG 4376 Query 110905 AGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAG 110964 || |||| || | ||| |||| ||| | | | || | || | |||||||| Sbjct 4377 TGATCCCTTGAACGATTCGTAGGGACCCTCCACCTTGGCAATCTCCATGGAAGCCTCCAG 4436 Query 110965 GGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC 111024 || ||||| || || || |||||||| | |||| ||| || || || || Sbjct 4437 GGCCGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTC 4496 Query 111025 AAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 ||| |||| || |||| | || | || || ||||| || ||||| | |||| Sbjct 4497 AAAGGGCATGCGCAG-GGCA----AGGAAAGCGTCGGCAAGACCCTGGACACCAACACCA 4551 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 111139 ||||||| ||| ||||| || || || || || || ||||| | || ||| Sbjct 4552 ATAGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGACATCA 4611 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 111199 |||| ||| || || | ||| | ||| |||| ||||||||| || | | | || Sbjct 4612 ATGATCTTGTTAAGGTTGCGGACAACGACCTTGGTGACTTCATGAAGCTTCTTAAAGTCG 4671 Query 111200 AAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACA 111259 | || | | | ||| || || ||||| | || ||||| ||||| || Sbjct 4672 TAGCAGCCTTCGTTGTAGTCGACGTAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCACACG 4731 Query 111260 GCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATC 111319 || |||||| | |||||| | || || || || | |||||| || || Sbjct 4732 GCAACCTCATCTGGGGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATG 4791 Query 111320 GTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGC 111379 || |||| ||||||||||| ||||| |||||| |||||||||||||||| |||| Sbjct 4792 GTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGG 4851 Query 111380 GTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAAT 111438 | || ||||| ||||| | || || || | | ||| | | || | | || || Sbjct 4852 TTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGCGG----AT 4907 Query 111439 GGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACC 111495 || ||| | ||||||||| ||||||||| || | ||| || |||||||| | Sbjct 4908 GGTCTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATACAAGGCCTCGAACTCCTC-GC 4966 Query 111496 CACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT 111554 || || ||| | || || || | || || || | || | ||| | ||| || Sbjct 4967 CATAGCAGTCAGCAAGGCCAGGACATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTT 5024 Query 111555 C--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG-GGATGAAAAGAGATCTCTAC 111611 | |||||| ||||||||||| ||||| |||||||| || | | | || || || | | Sbjct 5025 CTTCTCAACACGCTTCATGAAGAGGTCGGGAATCCAGAGAGCAAGGAACAAG-TCGCGAG 5083 Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 111671 || ||||||| | || ||||| || | ||||||||||| | || || |||| Sbjct 5084 CGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGT 5143 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTA 111725 |||| ||||| || |||| || | || || ||||| ||| | |||| | Sbjct 5144 GCCAGGGCTCGAGGTAGATGGCAAAAGCACC---AGGACGCTTGTTACCACCCTGATCGA 5200 Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785 |||| | || ||| ||| || || |||||||| ||||||||||| | || ||| | Sbjct 5201 CATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGT 5260 Query 111786 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845 | || || ||| ||| |||| | | |||| || || || ||||| | Sbjct 5261 TGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCAC 5320 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 ||||| || || || ||||| | | || || |||||||||| | ||| | Sbjct 5321 CAGCCATTTTGGAAATCATGGCACATGTCTTCAGGGTGTCATAGATACCCTCGATACTAT 5380 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCATTG 111964 | ||||| || ||| | |||||| ||||| ||| || || || ||||| || ||| Sbjct 5381 CGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTG 5439 Query 111965 AAGA-GGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCC 112021 || | |||| || | || || ||| | | |||| ||||| || |||||||||| Sbjct 5440 AACAGGGGTGGGGGAGGCATGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCC 5497 Query 112022 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGT 112081 | |||| |||||||| || || |||||| | | |||||||| | ||||| |||| Sbjct 5498 AGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACACCCGCATAATCATGTGCTGT 5557 Query 112082 GGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGA 112141 || || | | ||||||| ||| |||| || | ||| || || |||| Sbjct 5558 GGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGTATGACCGCTCCAGAGTCTTGAAG 5617 Query 112142 CCAAAGTA 112149 |||||||| Sbjct 5618 CCAAAGTA 5625 >seq535 Length=62126 Score = 118 bits (130), Expect = 1e-21 Identities = 348/524 (66%), Gaps = 13/524 (2%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| ||||||||||| || || || || || || || ||| ||||| Sbjct 15093 GGCAAAGTCAGTGTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 15152 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | || | ||| ||||||||| Sbjct 15153 AGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 15212 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAA 122836 ||||| || ||||| |||| ||||| | ||| ||||| ||| ||| | | || Sbjct 15213 GCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGA-AGAGTTCTTGTCCTGAA 15271 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 122896 ||| || || ||||| | ||||| || ||| || || | || | ||||| | | Sbjct 15272 TCCACTTGATGGCCCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGA 15331 Query 122897 ATAACT-GCTTC-TTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGT 122954 | | | ||| | | | | || ||||| ||||| |||| || | || || || Sbjct 15332 AGAGGTAGCTGCGCTGGCTGTTC--TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGT 15389 Query 122955 TTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTA 123013 ||| || | | | ||| ||| | || | ||||||| | || || ||| | Sbjct 15390 CTCGGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCATCGAGCCTCGGGGA 15448 Query 123014 TCTGAACCTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCA 123072 |||| ||||| |||| || | | | ||||| ||||| ||||| || | Sbjct 15449 TCTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCG 15507 Query 123073 GCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTC 123129 |||||||| |||||||||| ||||| | ||| || | || |||| || | ||| Sbjct 15508 GCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTC 15567 Query 123130 CAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 15568 CAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 15611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628013512308000