Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1903 235 7e-57 seq535 132 6e-26 >seq1903 Length=20131 Score = 235 bits (260), Expect = 7e-57 Identities = 1172/1849 (63%), Gaps = 42/1849 (2%) Strand=Plus/Plus Query 117798 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 117857 |||| | |||| |||||||| || ||||| | || ||||||||||| || ||| Sbjct 3796 TCAACGGTGAATTGAATGGGAGCAGCTGCGGCCTGAGTGCGCAGGTAGTACATGCCGGTC 3855 Query 117858 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTT 117917 ||||| || |||||||| || | ||||| || | |||| | || || Sbjct 3856 TTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGTCC 3915 Query 117918 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 117977 | |||| || ||||| ||||| || || ||||| || ||||| |||||||| Sbjct 3916 TTCATGTGGATGTTCAGGGACTGGGACTGGTCAATGAAAGCACCACGATCAGCCGCCATC 3975 Query 117978 TCAATCACATCCTTCATCTTGA----TTTCCCACACAGTCCTGTAGAGGTTCTTAATATC 118033 | | || || || ||| | |||||||| ||| |||| | | ||| ||||| Sbjct 3976 TGGA-CA-AT--TTGGCGCTGAGAAATCTCCCACACGGTCTTGTACAAGGCCTTGATATC 4031 Query 118034 ATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCAT 118093 || ||||| | ||| || || ||||| || | | | || | | |||||| Sbjct 4032 TTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCAT 4091 Query 118094 ATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAAC 118150 | | |||||||| || | | || |||| |||| || |||||||| Sbjct 4092 GGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTT---GAGAAGCCAGGGGTTGACAAC 4148 Query 118151 AACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCA 118210 ||||| || || ||| |||| | | ||||| |||| ||||| ||||| ||||| Sbjct 4149 CTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCA 4208 Query 118211 CTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCT 118270 ||| ||||| |||| || |||| || ||| ||||||||||| || | ||| | ||| Sbjct 4209 CTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTGGGCATGGGGGCGACGAGCAAGCT 4268 Query 118271 GTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTT 118330 ||| || | ||| | ||| | || | |||||||| | |||||| || | | Sbjct 4269 GTTGCGCACACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAAGTCAGA 4328 Query 118331 TGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAA 118390 | || | | |||||| || || |||||||| || | ||| || || ||||||| || Sbjct 4329 AGGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTGAA 4388 Query 118391 TGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATA 118450 | || || || ||||| |||| || | || | ||||| ||||| ||||| || Sbjct 4389 CGATTCGTAGGGACCCTCCACCTTGGCAATCTCCATGGAAGCCTCCAGGGCCGCGTGGTA 4448 Query 118451 CATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG 118510 ||||| ||||| || | |||| | |||||| || ||||| | | || Sbjct 4449 GATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGGCATGCG 4508 Query 118511 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 118570 || || | || || ||||| |||||||| | ||||| || || || | ||| Sbjct 4509 CAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATAGGTCGGTGGCGCAT 4568 Query 118571 ATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 118630 || || ||||| || || ||||| | || ||| || | | | || || || Sbjct 4569 GTTGCTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGACATCAATGATCTTGTTAAGGTT 4628 Query 118631 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 118690 | || ||||| |||| |||||||||||| | | || | | || | | Sbjct 4629 GCGGACAACGACCTTGGTGACTTCATGAAGCTTCTTAAAGTCGTAGCAGCCTTCGTTGTA 4688 Query 118691 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 118750 | ||| || ||| ||||| | || |||| || ||||| | |||||| | Sbjct 4689 GTCGACGTAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCACACGGCAACCTCATCTGGGGC 4748 Query 118751 AGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 118810 | |||||| || || || ||||| | ||| || || ||||| |||| ||||||||| Sbjct 4749 ACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTTTG 4808 Query 118811 ATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 118870 || ||| ||| || ||||||||| |||||| | || | || ||||| || || Sbjct 4809 GTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTG 4868 Query 118871 GGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTG---GCTCGCC 118926 || | || || | | ||| | | || | ||| | | ||| ||| | || | Sbjct 4869 GGCTTCCAGGATGGAATACCACAGCTTCTG-AGCGCGGA---TGGTCTTGCGACCACGTC 4924 Query 118927 CCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 118986 |||| | ||||||||| || | ||| || ||||| || || | || | || | Sbjct 4925 CCTCCTTCTCGTACTTCTCATACAAGGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGC 4984 Query 118987 CTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCAT 119044 | || | | ||||| | ||| | ||| | ||| || |||||| |||||||| Sbjct 4985 CAGGACATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACACGCTTCAT 5042 Query 119045 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 119104 ||||||||| || |||||||| || ||| | || ||| ||| | ||||| | || Sbjct 5043 GAAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCC 5102 Query 119105 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 119164 || || || | || | || || | || || |||||||| || || ||||| | Sbjct 5103 GTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGAT 5162 Query 119165 CGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTT 119218 || | | || | |||| |||| |||| | ||||| || |||||| ||| Sbjct 5163 GGCAAAAGCACC---AGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTT 5219 Query 119219 AAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGA 119278 || || |||||||| ||||| ||||| | ||| || || || || ||| ||| Sbjct 5220 GAACACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGA 5279 Query 119279 CTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 119338 |||| | || ||||| || || || ||||| || ||| || || || Sbjct 5280 GCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATTTTGGAAATCAT 5339 Query 119339 CGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 119398 || || | | || || | ||||| || ||||| || |||| | ||| | Sbjct 5340 GGCACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCATGTCGACCAA 5399 Query 119399 GAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGA-GAGTTGGTGTCGCG 119456 |||||| |||| || |||||| || ||||| |||||||| | | || || | || Sbjct 5400 GAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCGGCGTTGAACAGGGGTGGGGGAGGCA 5458 Query 119457 TGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTT 119514 ||| ||| | | |||| ||||| || ||| ||||||| ||| |||||| | Sbjct 5459 TGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGT 5516 Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATAC 119574 | || || || | || |||||||||| ||||| || || || | | | | Sbjct 5517 CTCCCCAGATGCCAACAGACACCCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGC 5576 Query 119575 CATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623 |||| ||| || | ||||| | ||||| ||||||| ||||| || Sbjct 5577 CATCAAGCTTCAGAAGGTATGACCGCTCCAGAGTCTTGAAGCCAAAGTA 5625 >seq535 Length=62126 Score = 132 bits (146), Expect = 6e-26 Identities = 349/523 (67%), Gaps = 11/523 (2%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| |||||||| ||||| |||||||| || || || ||| |||||| Sbjct 15093 GGCAAAGTCAGTGTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 15152 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | ||| | || ||||||||| Sbjct 15153 AGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 15212 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 ||||| || || || |||| || |||| |||||||| | ||| | || Sbjct 15213 GCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGAAT 15272 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 |||||| || ||||| | |||||||| || || || | ||||| || || | || Sbjct 15273 CCACTTGATGGCCCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAA 15332 Query 130255 GA-GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 130312 || || || | | ||| | || |||||||| | || ||||| || || || Sbjct 15333 GAGGTAGCTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTC 15390 Query 130313 TCGCCATGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 130371 ||| |||| | | ||| || | ||| | ||||||| | || || ||| || Sbjct 15391 TCGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGAT 15449 Query 130372 CTGTACCTCATCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 130430 ||| ||||| | || || | | | ||||| ||||| ||||| || | | Sbjct 15450 CTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGG 15508 Query 130431 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCC 130487 |||| || |||||||| | ||||| | || || | ||||||| || | |||| Sbjct 15509 CAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCC 15568 Query 130488 AGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||| |||||||| || ||||| | ||| || || ||||| Sbjct 15569 AGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 15611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618416994813800