Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1903 257 2e-63 seq535 143 3e-29 seq1702 98.7 1e-15 >seq1903 Length=20131 Score = 257 bits (284), Expect = 2e-63 Identities = 940/1444 (65%), Gaps = 52/1444 (4%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| | ||||| ||| | | || || || || |||||||| |||| Sbjct 5559 CCACAGCACATGATTATGCGGGTGTCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTC 5500 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCC-TC 104338 ||||||||||| || ||||| |||| | | ||| || || | || |||| | Sbjct 5499 CTGGAGACATACAACCTCATGTCTAGCAAGTTCT--TCACCCATGCCTCCCCCACCCCTG 5442 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||||| || ||||| || |||| ||||| |||||| | ||| || ||||| Sbjct 5441 TTCAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGAC 5382 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 || ||| | |||||||||| || || | | ||||| || || || |||| Sbjct 5381 GATAGTATCGAGGGTATCTATGACACCCTGAAGACATGTGCCATGATTTCCAAAATGGCT 5322 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518 || ||||| || || || |||| | | |||| ||| ||| || || Sbjct 5321 GGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACC 5262 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || ||| || | ||||||||||| |||||||| || || ||| ||| || | ||| Sbjct 5261 AACGGTACCTCCAACGGTATTATTCCCATGCTTCGAGTGTTCAACAACACTGCCAGATAT 5202 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || |||| | ||| ||||| || || | || |||| || ||||| ||| Sbjct 5201 GTCGATCAGGGTGGTAACAAGCGTCCT---GGTGCTTTTGCCATCTACCTCGAGCCCTGG 5145 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || || | ||||||||||| | || ||||| || | || |||| ||| Sbjct 5144 CACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGC 5085 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | ||||| | ||| |||||||||||||| || |||||||||||| | |||||| Sbjct 5084 GCT--CGCGACTTGTTCCTTGCTCTCTGGATTCCCGACCTCTTCATGAAGCGTGTTGAGA 5027 Query 104751 AGA--GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCG 104807 ||| ||| | ||| | ||| | || || || | ||||| || | || ||| Sbjct 5026 AGAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGTCCTGGCCTTGCTGACTGCTA 4969 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC-- 104865 | || |||||||| || ||| | || ||||||||| | || || || | | | || Sbjct 4968 T-GGCGAGGAGTTCGAGGCCTTGTATGAGAAGTACGAGAAGGAGGGACGTG-GTC-GCAA 4912 Query 104866 GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924 ||| | | ||| | || | ||||| | | || || | | || ||||||||||||| Sbjct 4911 GACCATCCGCGCT-CAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGGTA 4853 Query 104925 CACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984 || | |||||| ||||| || ||| |||| ||||| || |||||||| |||| Sbjct 4852 ACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAACCTGGGAA 4793 Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 ||| || ||||| ||||| || || ||| | || | | | ||||||| | Sbjct 4792 CCATCCGCAGCTCCAACCTCTGCACCGAGATCATCGAGTACTGTGCCCCAGATGAGGTTG 4733 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC-- 105102 | ||||| ||| | || || | || ||||| || || || | | | || ||| | Sbjct 4732 CCGTGTGCAACTTGGCCTCTTTGGCCCTCCCTGCTTACGTCGA-CTACA-ACGAAGGCTG 4675 Query 105103 ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162 | || | | | || || || ||||| || || || | ||||| |||| | Sbjct 4674 CTACGACTTTAAGAAGCTTCATGAAGTCACCAAGGTCGTTGTCCGCAACCTTAACAAGAT 4615 Query 105163 TATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 |||||| || | || || || || ||||| || || ||| | ||||| || Sbjct 4614 CATTGATGTCAACTACTATCCTGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGACC 4555 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTG 105281 |||||| | ||||| |||||||| || || | ||| || | || ||| | |||| Sbjct 4554 TATTGGTGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCCCTG-CGCATGCCCTTTG 4496 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | || ||| || || | || || || |||||||| || || ||||| || | Sbjct 4495 AGTCTCCCGAGGCTCGCGAGCTGAACAAGCAGATCTTTGAGACAATCTACCACGCGGCCC 4436 Query 105342 TTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 | ||||| | || ||| | || |||| || ||||| || ||| | || |||| || Sbjct 4435 TGGAGGC--TTCCATGGAGATTGCCAAGGTGGAGGGTCCCTACGAATCGTTCAAGGGATC 4378 Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC--A 105456 || || || | || | || ||||| || |||||||| | |||| |||| | Sbjct 4377 ACCTGCATCCGAGGGCATCCTCCAATTCGACATGTGGGATG------TCAAGCCTTCTGA 4324 Query 105457 C---TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 105513 | | || ||||| | |||||||| | ||||||||| | ||| | || ||||| | Sbjct 4323 CTTGTGGGAGTGGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGCTT 4264 Query 105514 CCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 105573 ||| | || || ||||| || ||| ||| | || || |||| || || || ||||| Sbjct 4263 GCTCGTCGCCCCCATGCCCACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTT 4204 Query 105574 TGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGT 105633 || |||||||| | |||||||| | | || | ||| || || ||||| | |||| Sbjct 4203 CGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGT 4144 Query 105634 CAAC 105637 |||| Sbjct 4143 CAAC 4140 >seq535 Length=62126 Score = 143 bits (158), Expect = 3e-29 Identities = 353/523 (67%), Gaps = 13/523 (2%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||| || |||||| | ||||| || |||||| || |||| ||||| | | | || Sbjct 15611 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 15552 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 || | || ||| | ||||| |||||||||| |||||||| | || ||||| ||| Sbjct 15551 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 15492 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616 || ||||| | | ||| | ||||| || |||| | || || ||| Sbjct 15491 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCC-GAGGCTCGATG 15433 Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675 |||||| | | ||| |||| ||| | | | || ||||| ||| |||| Sbjct 15432 CTTCTACGGCTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 15374 Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAA-GAAGC-AGCTCTTTGAAGCCATCCAAAC 94733 | |||| || || ||||| | | | | | ||| | ||||| | ||||| | || Sbjct 15373 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 15316 Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||| || |||| || || || || ||||| || |||||| || | |||| | | Sbjct 15315 CATTCCTTGCATTCGCAAAAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGAACTC 15256 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 ||||||||| |||| || | || ||||| || ||||| ||||||||| ||| Sbjct 15255 -TTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTG 15197 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 |||| | | || | ||| |||||||||||||||||||||| ||||| ||| |||| Sbjct 15196 CCTTTGCCTCCATCTTCTGGGTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCA 15137 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| ||||||||||| ||||| || ||| || ||||| Sbjct 15136 ACGAGCTCATCTCTCGTGATGAGGGTCTGCACACTGACTTTGC 15094 >seq1702 Length=100212 Score = 98.7 bits (108), Expect = 1e-15 Identities = 183/262 (70%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||| || || || |||||||||| |||||| ||| ||| | ||| | | | || | Sbjct 77827 GGCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGACCCTCAGCGAACAA 77886 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821 || | ||||| | ||||| |||||||||||||||||||| | | || || Sbjct 77887 GTCTCTCACACGAGAAGGACCCACGCCAACAAACATCTCCACAAACTCGGATCCGCTCAC 77946 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 || | ||| || || || || || ||| | || ||||||||||||||| || | Sbjct 77947 GCTGAA-GAAAGGCACGCCGGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTG 78005 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGT 9938 | ||||| || ||||| | ||||||||| ||||||||||| || |||| |||| | Sbjct 78006 TTCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTGGCACCCAGCTTCTCAAACT 78065 Query 9939 ATCTCTCAGGTTGCTT-AAGAA 9959 |||| |||||||| ||||| Sbjct 78066 ---TCTCGGGTTGCTTCAAGAA 78084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583243630260200