Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1667 141 3e-28 seq1790 114 4e-20 seq1626 105 2e-17 >seq1667 Length=31153 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || || || |||||||| || || || || || || Sbjct 22716 CATACCACCACGAAGGCGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 22657 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| || ||||| || |||||||| || ||||| ||||| ||||| Sbjct 22656 GGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGG 22597 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || |||| || || || || || | ||| || | || Sbjct 22596 AGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTATCGGACGACTC 22537 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || || ||||| Sbjct 22536 CACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 22486 Score = 134 bits (148), Expect = 4e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || ||||| ||||| || ||||| || || || Sbjct 23015 CATACCACCACGGAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTC 22956 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| ||||| || || || || ||||| | || ||||| ||||| Sbjct 22955 GGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGG 22896 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || || || ||||| | |||||||| || Sbjct 22895 AGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCAGATGACTC 22836 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||||||||| || || || || Sbjct 22835 CACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGAC 22797 Score = 129 bits (142), Expect = 2e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| ||||| || ||| |||||||| || || || Sbjct 23243 CATACCACCACGCAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTTTGAATGTTGTAGTC 23184 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || || || || || || || || ||||||||||| ||||| |||||||| || Sbjct 23183 GCTCAAAGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCCGG 23124 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || | || ||||| || || | || |||| || Sbjct 23123 GGGGATACCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGACTC 23064 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || | ||| | ||||| ||||| | || || || || |||||||| Sbjct 23063 AACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 23013 Score = 104 bits (114), Expect = 7e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| |||||||| | | || || | || || || ||| || || || || | Sbjct 23475 TTTACTGGCCACCACGAAGACGAAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGT 23416 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || ||||| || || || ||||||||||| | || ||||| | Sbjct 23415 AGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGT 23356 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| || || || |||||||| || | || || || || || | || || | Sbjct 23355 CAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAG 23296 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || || | |||||| || || || || || || ||||||||||| Sbjct 23295 ATTCCACCTCGAGGGTGATTGTCTTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241 >seq1790 Length=95376 Score = 114 bits (126), Expect = 4e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || |||||||| || || || || || || || Sbjct 27667 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 27726 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | ||||| ||||| || || || || ||||| ||||| | || ||||| || || || Sbjct 27727 GAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGG 27786 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || ||||| || || | || || | || || Sbjct 27787 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 27846 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 27847 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 27894 >seq1626 Length=34239 Score = 105 bits (116), Expect = 2e-17 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 378231 AATATAACCAGTTT-GACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCA 378289 ||||||||| |||| | || || || || ||||||||||| | ||| |||||||| ||| Sbjct 17940 AATATAACCGGTTTCGGCT-GTCTTGACGGCAGTATCAATGAGACCTTCACGACCAGCCA 17998 Query 378290 TTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATC 378349 | || |||||||| || || | ||| || || |||| | | ||| |||| | ||| | Sbjct 17999 TGGCGTGGAAGAAGAACTCGGAAGGTGTGAGACCACGGAGGTAAGAATTCTCGACAAAGC 18058 Query 378350 CTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACC 378409 | | || | || || | ||||| || || ||||||| | || || | | || | Sbjct 18059 CACGAGCCTCGGGTGAGTAATCATCCTTGGTGAAATGAGGGAGGGTTCGGTATTTGAAGC 18118 Query 378410 CATATGGAATTCGTTTTCCATCAACATTCTGTTGACC 378446 || ||||||| || ||||| |||||| |||| || || Sbjct 18119 CAAATGGAATACGCTTTCCTTCAACAATCTGCTGTCC 18155 Score = 95.1 bits (104), Expect = 4e-14 Identities = 119/159 (75%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 377432 CAGATAATGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATG 377491 ||||| ||| ||| || ||| | | || |||||||| |||| || ||| || || | Sbjct 17127 CAGAT--TGAGAAT-TTCCTTGAGT-CGGGGCACACCGAGTGTGACGTTC---TTGGAAG 17179 Query 377492 CAACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACT 377551 ||||| ||||||||||| || || || || | || || | |||||||||||| |||| Sbjct 17180 ACACACCGGCAAAGTGGAAGGTGTTCAGTGTCATCTGCGTGGCGGGCTCACCAATGGACT 17239 Query 377552 GCGCTGCAATAACGCCAACCATTTCTCCAGGATTGACAA 377590 | || |||| |||||||||||||| || || || |||| Sbjct 17240 GGGCGGCAAGGACGCCAACCATTTCACCGGGGTTAACAA 17278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515208679566065