Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1903 214 2e-50 seq535 87.8 2e-12 >seq1903 Length=20131 Score = 214 bits (236), Expect = 2e-50 Identities = 399/579 (69%), Gaps = 13/579 (2%) Strand=Plus/Minus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCC 53289 |||||||| ||||| ||| || | ||| ||| |||| ||| || || ||| | || Sbjct 5506 GCGTGTCCTGGAGACATACAACCTCATGTCTAGC---AAGTTCTTCACCCATGCCTCCCC 5450 Query 53290 AACCC-TGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGA 53348 |||| |||||||||| ||||| || | ||| |||| |||||| |||| | | Sbjct 5449 CACCCCTGTTCAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACA 5390 Query 53349 TGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCA 53408 ||||||| || ||||| || ||||| || || || ||| |||||| || |||| Sbjct 5389 TGAAGGACGATAGTATCGAGGGTATCTATGACACCCTGAAGACATGTGCCATGATTTCCA 5330 Query 53409 AGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAAT 53466 | | | ||||||||||| | || || | || ||||||| | |||| | || Sbjct 5329 AAATGGCTGGTGGTATCGGCTTGAACG--TCCACCGCATCCGTGCCACCGGCTCTTACAT 5272 Query 53467 CAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACAC 53526 || || ||||| | || | || || | || ||||| || || ||||||||||| Sbjct 5271 TGCTGGCACCAACGGTACCTCCAACGGTATTATTCCCATGCTTCGAGTGTTCAACAACAC 5212 Query 53527 GGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGA 53586 ||| | || ||| | ||||||||| ||||| || | || |||||||||||||| Sbjct 5211 TGCCAGATATGTCGATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTCGA 5152 Query 53587 GCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGA 53646 ||| |||||||||||| | | ||||| || || || || ||| || || | ||||| Sbjct 5151 GCCCTGGCACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGA 5092 Query 53647 GATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGT 53706 | | ||| || ||| |||| ||||| |||||||| |||||||||||| | || Sbjct 5091 GGTCCGCGCTCGCGACTTGTTCCTTGCTCTCTGGATTCCCGACCTCTTCATGAAGCGTGT 5032 Query 53707 GGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTG 53765 |||||| || ||| ||| || |||||||| ||||| || || |||| | | | || Sbjct 5031 TGAGAAGAACTTGGACTGGACGCTCATGTGCCCCAACGAATGTCCTGGCCTTGCTGACTG 4972 Query 53766 TCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACG 53804 ||| || |||||||| | | ||||| || ||||| Sbjct 4971 -CTATGGCGAGGAGTTCGAGGCCTTGTATGAGAAGTACG 4934 Score = 123 bits (136), Expect = 3e-23 Identities = 303/451 (67%), Gaps = 19/451 (4%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | ||||||| || || ||||| || || || | ||||| |||||||| Sbjct 4274 CGCAACAGCTTGCTCGTCGCCCCCATGCCCACTGCCAGTACCTCCCAGATTCTGGGCAAC 4215 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| |||||||||||| ||| || ||| || || ||| Sbjct 4214 AACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAG 4155 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | ||||| || ||||||||||| | | | | ||| ||| Sbjct 4154 TTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACCGGCCTCTGGT--CCG 4097 Query 55664 CAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGAT 55716 | || |||| || || |||| |||||| ||| | ||||| || | Sbjct 4096 ATGCCATGAAGAACCGTATCATTGCTGAGAACGGC---TCCATTCAGAACATCCCCAACA 4040 Query 55717 TCCTCTGCG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775 ||| | | | |||||| | ||| ||| |||||||||||| | ||| | | | Sbjct 4039 TCCCCGAAGATATCAAGGCCTTGTACAAGACCGTGTGGGAGATTTCTCAGC---GCCAAA 3983 Query 55776 TTGAC---ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832 ||| | ||| |||||||||||||| | ||| |||||||||||||| ||||||||| Sbjct 3982 TTGTCCAGATGGCGGCTGATCGTGGTGCTTTCATTGACCAGTCCCAGTCCCTGAACATCC 3923 Query 55833 TCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892 |||| || | || || ||| |||| | | | |||||||| || |||||| | Sbjct 3922 ACATGAAGGACCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTG 3863 Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGAC 55923 | |||||||| || |||||||| ||||| || Sbjct 3862 GTCTCAAGACCGGCATGTACTACCTGCGCAC 3832 >seq535 Length=62126 Score = 87.8 bits (96), Expect = 2e-12 Identities = 340/520 (65%), Gaps = 36/520 (7%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || ||||| | || |||||||| || || |||||||| | ||| ||||||| Sbjct 15133 TCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAGGCA 15192 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGC---- 74905 |||| ||| |||||||||||||| ||||| |||||||| || ||||| || || Sbjct 15193 AAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAG 15252 Query 74906 GAACGGTGCAT---CGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC 74962 ||| || | | | || ||||| | ||||| || || ||| | || || Sbjct 15253 GAAGAGTTCTTGTCCTGA----ATCCACTTGATGGCCCAGTCGGCCTTT-TTGCGAATGC 15307 Query 74963 -AGGGACAGTATCGATCGCTTGGAAGAG---GCT-TGCCTTCTCTTCGGGATCCTTGACG 75017 ||| | || || || || | |||||| ||| || || ||| ||||||| | Sbjct 15308 AAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTC----TCCTTGATG 15363 Query 75018 AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTAC 75077 |||| || | || ||||| ||||| || || || ||| | | |||| | Sbjct 15364 TAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAG 15423 Query 75078 GCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT--CCTTTGAAAAATTCATGTCGATAT 75135 ||||||| | || ||||| | ||||| || | || |||| || | | | | Sbjct 15424 CCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTC--GACCAGGT 15481 Query 75136 TCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGC 75195 |||| |||| ||||| || |||||||| || || ||||| | ||| |||| Sbjct 15482 TCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACT 15541 Query 75196 GC---TCATCG-TCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCC 75251 | |||||| |||| | | |||| ||| || | ||| ||| | || ||||||||| Sbjct 15542 TCTCGTCATCGTTCAG-GCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCT 15600 Query 75252 TCGACCGTCCAGAA--ACTCCCAATC-GCCTTTTTGTACA 75288 ||| | |||||||| | || || ||||||||||||| Sbjct 15601 TCGGCGGTCCAGAAGGAGGCC---TCGGCCTTTTTGTACA 15637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547199891329000