Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1903 214 2e-50
seq535 87.8 2e-12
>seq1903
Length=20131
Score = 214 bits (236), Expect = 2e-50
Identities = 399/579 (69%), Gaps = 13/579 (2%)
Strand=Plus/Minus
Query 53233 GCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCC 53289
|||||||| ||||| ||| || | ||| ||| |||| ||| || || ||| | ||
Sbjct 5506 GCGTGTCCTGGAGACATACAACCTCATGTCTAGC---AAGTTCTTCACCCATGCCTCCCC 5450
Query 53290 AACCC-TGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGA 53348
|||| |||||||||| ||||| || | ||| |||| |||||| |||| | |
Sbjct 5449 CACCCCTGTTCAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACA 5390
Query 53349 TGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCA 53408
||||||| || ||||| || ||||| || || || ||| |||||| || ||||
Sbjct 5389 TGAAGGACGATAGTATCGAGGGTATCTATGACACCCTGAAGACATGTGCCATGATTTCCA 5330
Query 53409 AGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAAT 53466
| | | ||||||||||| | || || | || ||||||| | |||| | ||
Sbjct 5329 AAATGGCTGGTGGTATCGGCTTGAACG--TCCACCGCATCCGTGCCACCGGCTCTTACAT 5272
Query 53467 CAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACAC 53526
|| || ||||| | || | || || | || ||||| || || |||||||||||
Sbjct 5271 TGCTGGCACCAACGGTACCTCCAACGGTATTATTCCCATGCTTCGAGTGTTCAACAACAC 5212
Query 53527 GGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGA 53586
||| | || ||| | ||||||||| ||||| || | || ||||||||||||||
Sbjct 5211 TGCCAGATATGTCGATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTCGA 5152
Query 53587 GCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGA 53646
||| |||||||||||| | | ||||| || || || || ||| || || | |||||
Sbjct 5151 GCCCTGGCACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGA 5092
Query 53647 GATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGT 53706
| | ||| || ||| |||| ||||| |||||||| |||||||||||| | ||
Sbjct 5091 GGTCCGCGCTCGCGACTTGTTCCTTGCTCTCTGGATTCCCGACCTCTTCATGAAGCGTGT 5032
Query 53707 GGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTG 53765
|||||| || ||| ||| || |||||||| ||||| || || |||| | | | ||
Sbjct 5031 TGAGAAGAACTTGGACTGGACGCTCATGTGCCCCAACGAATGTCCTGGCCTTGCTGACTG 4972
Query 53766 TCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACG 53804
||| || |||||||| | | ||||| || |||||
Sbjct 4971 -CTATGGCGAGGAGTTCGAGGCCTTGTATGAGAAGTACG 4934
Score = 123 bits (136), Expect = 3e-23
Identities = 303/451 (67%), Gaps = 19/451 (4%)
Strand=Plus/Minus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|||||| | ||||||| || || ||||| || || || | ||||| ||||||||
Sbjct 4274 CGCAACAGCTTGCTCGTCGCCCCCATGCCCACTGCCAGTACCTCCCAGATTCTGGGCAAC 4215
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603
|||||| |||||||| ||||| |||||||||||| ||| || ||| || || |||
Sbjct 4214 AACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAG 4155
Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663
|| | ||||| || ||||||||||| | | | | ||| |||
Sbjct 4154 TTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACCGGCCTCTGGT--CCG 4097
Query 55664 CAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGAT 55716
| || |||| || || |||| |||||| ||| | ||||| || |
Sbjct 4096 ATGCCATGAAGAACCGTATCATTGCTGAGAACGGC---TCCATTCAGAACATCCCCAACA 4040
Query 55717 TCCTCTGCG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775
||| | | | |||||| | ||| ||| |||||||||||| | ||| | | |
Sbjct 4039 TCCCCGAAGATATCAAGGCCTTGTACAAGACCGTGTGGGAGATTTCTCAGC---GCCAAA 3983
Query 55776 TTGAC---ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832
||| | ||| |||||||||||||| | ||| |||||||||||||| |||||||||
Sbjct 3982 TTGTCCAGATGGCGGCTGATCGTGGTGCTTTCATTGACCAGTCCCAGTCCCTGAACATCC 3923
Query 55833 TCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892
|||| || | || || ||| |||| | | | |||||||| || |||||| |
Sbjct 3922 ACATGAAGGACCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTG 3863
Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGAC 55923
| |||||||| || |||||||| ||||| ||
Sbjct 3862 GTCTCAAGACCGGCATGTACTACCTGCGCAC 3832
>seq535
Length=62126
Score = 87.8 bits (96), Expect = 2e-12
Identities = 340/520 (65%), Gaps = 36/520 (7%)
Strand=Plus/Plus
Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849
|| || ||||| | || |||||||| || || |||||||| | ||| |||||||
Sbjct 15133 TCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAGGCA 15192
Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGC---- 74905
|||| ||| |||||||||||||| ||||| |||||||| || ||||| || ||
Sbjct 15193 AAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAG 15252
Query 74906 GAACGGTGCAT---CGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC 74962
||| || | | | || ||||| | ||||| || || ||| | || ||
Sbjct 15253 GAAGAGTTCTTGTCCTGA----ATCCACTTGATGGCCCAGTCGGCCTTT-TTGCGAATGC 15307
Query 74963 -AGGGACAGTATCGATCGCTTGGAAGAG---GCT-TGCCTTCTCTTCGGGATCCTTGACG 75017
||| | || || || || | |||||| ||| || || ||| ||||||| |
Sbjct 15308 AAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTC----TCCTTGATG 15363
Query 75018 AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTAC 75077
|||| || | || ||||| ||||| || || || ||| | | |||| |
Sbjct 15364 TAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAG 15423
Query 75078 GCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT--CCTTTGAAAAATTCATGTCGATAT 75135
||||||| | || ||||| | ||||| || | || |||| || | | | |
Sbjct 15424 CCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTC--GACCAGGT 15481
Query 75136 TCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGC 75195
|||| |||| ||||| || |||||||| || || ||||| | ||| ||||
Sbjct 15482 TCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACT 15541
Query 75196 GC---TCATCG-TCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCC 75251
| |||||| |||| | | |||| ||| || | ||| ||| | || |||||||||
Sbjct 15542 TCTCGTCATCGTTCAG-GCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCT 15600
Query 75252 TCGACCGTCCAGAA--ACTCCCAATC-GCCTTTTTGTACA 75288
||| | |||||||| | || || |||||||||||||
Sbjct 15601 TCGGCGGTCCAGAAGGAGGCC---TCGGCCTTTTTGTACA 15637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547199891329000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |