Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1903 313 3e-80
seq1667 194 2e-44
seq1790 158 1e-33
seq2135 129 7e-25
seq2023 91.5 2e-13
>seq1903
Length=20131
Score = 313 bits (346), Expect = 3e-80
Identities = 1145/1764 (65%), Gaps = 74/1764 (4%)
Strand=Plus/Plus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || ||||| ||||||||||| |||||||| || ||||||||| | ||||
Sbjct 3826 GCCTGAGTGCGCAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGC 3885
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| | | ||| | | |||||||| || |||| ||||||||| ||||| |||||
Sbjct 3886 ATGCTGGTAATCTTGCCCATTGTGGGGTCCTTCATGTGGATGTTCAGGGACTGGGACTGG 3945
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211
|||||||| |||||||| |||||||| | | |||| || | ||| |||||
Sbjct 3946 TCAATGAAAGCACCACGATCAGCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAC 4005
Query 80212 ACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCA 80268
|| || |||| |||| | || || || |||| | | | | | ||
Sbjct 4006 ACGGTCTTGTACAAGGCCTTGATA---TCTTCGGGGATGTTGGGGATGTTCTGAATGGAG 4062
Query 80269 CCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGA 80325
|||| || |||| | || |||| || | ||||| || | | |||
Sbjct 4063 CCGTTCTCAGCAATGATACGGTTCTTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGG 4122
Query 80326 TCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA 80382
|| || | ||| | | ||| || | || |||| || || ||| || ||| |
Sbjct 4123 TCCTTGAGAAGCCAGGGGTTGACAACCTGGA---ACTCGCCGGCAAGGACACGTCGCTGG 4179
Query 80383 TACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTC 80442
|| | ||| | |||||| ||||| || ||||||||| || || ||||| | || ||
Sbjct 4180 TAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTG 4239
Query 80443 GCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC- 80501
|| || ||||| ||| |||| | || || |||| ||||||| |||||| | |||
Sbjct 4240 GCAGTGGGCATGGGGGCGACGAGCAAGCTGTTGCGCACACCGTGCTCCTTGATCTGCTCC 4299
Query 80502 --GCGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCT 80554
| || | || || || || ||| || ||| |||| ||||||||||| |
Sbjct 4300 TTGAGCGAGTCCCACTCCCACAAGTCAG----AAGGCT-TGACATCCCACATGTCGAATT 4354
Query 80555 GCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGG 80614
| | ||||||||| || || || || ||| ||||| ||||| || |||||| |||||
Sbjct 4355 GGAGGATGCCCTCGGATGCAGGTGATCCCTTGAACGATTCGTAGGGACCCTCCACCTTGG 4414
Query 80615 CCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA 80674
| | ||| || || ||||||||||| || || |||||||| ||||||||
Sbjct 4415 CAATCTCCATGGAAGCCTCCAGGGCCGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCA 4474
Query 80675 CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGC 80734
|||| |||| || || || | || || || | ||| |||| || || |
Sbjct 4475 GCTCGCGAGCCTCGGGAGACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGAC 4534
Query 80735 CCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATT 80793
|||| || || | | || || ||||||||| |||| | | || |||||| | |
Sbjct 4535 CCTGGACACCAACACCAATAGGTCGGTGGCGCATGTTGCTGTTGC-GAGCCTCCTGGACA 4593
Query 80794 GGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCA 80853
|| || |||| ||| |||| ||| |||||||| ||| ||| || || |||
Sbjct 4594 GGATAGTAGTTGACATCAATGATCTTGTTAAGGTTGCGGACAACGACCTTGGTGACTTCA 4653
Query 80854 TGAAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGG 80907
||||| |||| ||||||| | || ||| | || | || || ||| ||
Sbjct 4654 TGAAGCTTCTTAAAGTCGTAGCAGCCTTCGTTGTAGTCGACGTAAGCAGGGAGGGCCAAA 4713
Query 80908 GACGCCAGATTGCACACGGCCACCTCTTC---AGCATCTGTAAACTCGACGATTTCCGTG 80964
|| |||| ||||||||||| ||||| || ||| | || |||||| ||| || |||
Sbjct 4714 GAGGCCAAGTTGCACACGGCAACCTCATCTGGGGCA-CAGT--ACTCGATGATCTCGGTG 4770
Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024
|| | || || || || |||||||| || ||||| |||| ||||||
Sbjct 4771 CAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGA 4830
Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084
||||||||| |||| | ||| |||| |||||| ||| | | ||||||| | |||
Sbjct 4831 TCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCAC 4890
Query 81085 ATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCT 81144
| || | || || |||||| || || | | ||||| | ||
Sbjct 4891 AGCTTCTGAGCGCGGATGGTCTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATACAAG 4950
Query 81145 TCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203
| ||||||| | || | | || |||| ||| | || || ||||| |||||||| ||
Sbjct 4951 GCCTCGAACTCCTCGCCATAGCAG-TCAGCAAGGCCAGGACATTCGTTGGGGCACATGAG 5009
Query 81204 GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGT 81263
|||||| || ||||| ||| ||||||||| ||| || |||||||| ||
Sbjct 5010 CGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGGTCGGGAATCCAGAGAGCAAG 5069
Query 81264 GAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAG 81321
||||| |||||| |||||| |||| || | || ||||| ||| | || || ||
Sbjct 5070 GAACAAGTCGCG--AGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAC 5127
Query 81322 TCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGA 81375
|| | || ||| || ||||| ||||| || || | ||| | | || | |||| |
Sbjct 5128 TCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAAGCACCAGGACGCTTGTTA 5187
Query 81376 CGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATA 81435
|||||||| | ||| || | |||||| ||| || || || | ||| || || |||
Sbjct 5188 ---CCACCCTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATA 5244
Query 81436 CCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATT 81495
|| | || |||||| || || | || || || |||| || | ||| | |
Sbjct 5245 CCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGA---TGC-GGTG 5300
Query 81496 GA-----AAGACCGATGCCACCTGACCACTTT-GAAATCTGAGCACACCGGTTCATGGTC 81549
|| ||| ||||| ||||| | ||| ||| |||||| ||||| |||| |||
Sbjct 5301 GACGTTCAAG-CCGATACCACCAG-CCATTTTGGAAATCATGGCACATGTCTTCAGGGTG 5358
Query 81550 TCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGA 81609
||||| || |||||||| ||||| | |||||||| | |||||| || |||| ||
Sbjct 5359 TCATAGATACCCTCGATACTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCT-- 5416
Query 81610 GGGCTTTTTGAG--CCGGCATTGAACA-GTGTTGGGGTCGCGTGAATGAAATAACGGTTT 81666
|||| | | | ||||| ||||||| | || |||| || || |||| | | |
Sbjct 5417 GGGCCTGCGGGGTACCGGCGTTGAACAGGGGTGGGGGAGGCATGGGTGAAGAACTTGCTA 5476
Query 81667 GACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCT 81726
||||| |||| || || ||| ||| || ||| ||||| || || || | ||
Sbjct 5477 GACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGAC 5536
Query 81727 ACACGCATAAACATGTACTGGGGC 81750
|| ||||||| ||||| ||| |||
Sbjct 5537 ACCCGCATAATCATGTGCTGTGGC 5560
>seq1667
Length=31153
Score = 194 bits (214), Expect = 2e-44
Identities = 179/227 (79%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || ||||||||||| || || || ||||| |||||
Sbjct 22486 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCC 22545
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || | ||| |||| || |||||||||||||| |||||||| ||||||
Sbjct 22546 GATACCATCGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 22605
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||||||||| |||||||||||||||| || || || | ||||| ||
Sbjct 22606 CAGCGTCTGATTTTTGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 22665
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || || || || | || ||||| |||||
Sbjct 22666 ATCCAGAAGGAGTCTACCCTCCACCTGGTTCTCCGCCTTCGTGGTGG 22712
Score = 174 bits (192), Expect = 2e-38
Identities = 177/228 (78%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||| | ||||||||||| || || | ||||||||||||
Sbjct 23013 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAGTCATCA 23072
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | || ||||||||||||||||| || || || || |||
Sbjct 23073 GACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCGGATCAG 23132
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| || |||||||||||||| |||||||| | ||| || | ||| ||||| ||
Sbjct 23133 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGTCGCACTTTGAGC-GACTACAA 23191
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| ||| ||||| || ||| | ||||| || |||||
Sbjct 23192 CATTCAAAAGGAGAGCACACTTCACCTTGTCCTCCGTCTGCGTGGTGG 23239
Score = 158 bits (174), Expect = 1e-33
Identities = 164/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || ||||| ||||| || || || ||||| |||||| ||||| |||||
Sbjct 22797 GTCAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATTGAC 22856
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||| | || || |||||||||||||| || ||||| ||||||||||| | ||
Sbjct 22857 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGCTTGATC 22916
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| || || ||||| || ||||||| || ||||| | ||||| || | || |||||
Sbjct 22917 TTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATTCAGAAGGAG 22976
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||| || || ||| | ||||| || |||||
Sbjct 22977 TCCACTCTCCACCTTGTCCTTCGTCTCCGTGGTGG 23011
Score = 143 bits (158), Expect = 3e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || |||||||| || || || ||||| || ||
Sbjct 23241 ATGCAGATTTTCGTCAAGACTCTCACAGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 23300
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || ||||||||||||||||| |||||||| ||||||
Sbjct 23301 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 23360
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| | || |||||||||||||| || || || | ||| ||| | ||| ||||| ||
Sbjct 23361 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGC-GACTACAA 23419
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| ||| || || | || | |||||||| ||||| ||
Sbjct 23420 CATCCAGAAGGAGAGCACGCTGCACTTGGTGCTTCGTCTTCGTGGTGGCCA 23470
>seq1790
Length=95376
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || || |||||||| |||||
Sbjct 27894 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 27835
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | || || |||||||||||||| ||||| || ||||||
Sbjct 27834 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 27775
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || ||||||||||| || ||||||| || ||||| | ||||| ||
Sbjct 27774 CAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTACAAC 27715
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || || || ||| |||| || || |||||
Sbjct 27714 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 27668
>seq2135
Length=79206
Score = 129 bits (142), Expect = 7e-25
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || |||||||| || || |||||||| ||||| || | ||
Sbjct 76292 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 76351
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| |
Sbjct 76352 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 76411
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| |||||||| ||||| |||||||||| || ||||| | ||||| || |||| |||
Sbjct 76412 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAG 76471
Query 27595 G 27595
|
Sbjct 76472 G 76472
>seq2023
Length=152745
Score = 91.5 bits (100), Expect = 2e-13
Identities = 173/252 (69%), Gaps = 2/252 (1%)
Strand=Plus/Minus
Query 32002 CAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTG-TCGAGTGACATGAAGGTGGC 32060
||||| |||||| | ||||| || |||||| ||| || || || ||| ||||| |
Sbjct 20341 CAGCGAAAGGTGCTCTACGCATGTTTCAAGAGAAACGTGGTCAAG-GACGAAAAGGTTGT 20283
Query 32061 GCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCA 32120
| ||||| | || || || | | | || ||||| ||||||||||| || || || ||
Sbjct 20282 GGAGCTGGCTGGTTATGTCTCTGGACTGACTGCCTACCACCACGGCGAAGCCTCTCTGCA 20223
Query 32121 GGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGA 32180
| ||||| | || || ||| | ||||| || | |||||| | || | || ||
Sbjct 20222 GCAAACCATCATTGGACTGGCCCAGGATTTTGTGGGATCCAATAACATCAATGTTCTGGA 20163
Query 32181 GCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTA 32240
||| || | ||||| | || || ||||||||| |||||||| ||| | |||||
Sbjct 20162 GCCCAGCGGTAACTTTGGTTCTCGACTTGCCGGTGGCTCTGATGCTGCCAGCCCTCGTTA 20103
Query 32241 CATCTTCACCCG 32252
| ||| |||||
Sbjct 20102 TACCTTTACCCG 20091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570293611487600
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