Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1903 313 3e-80 seq1667 194 2e-44 seq1790 158 1e-33 seq2135 129 7e-25 seq2023 91.5 2e-13 >seq1903 Length=20131 Score = 313 bits (346), Expect = 3e-80 Identities = 1145/1764 (65%), Gaps = 74/1764 (4%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || ||||| ||||||||||| |||||||| || ||||||||| | |||| Sbjct 3826 GCCTGAGTGCGCAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGC 3885 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || | | ||| | | |||||||| || |||| ||||||||| ||||| ||||| Sbjct 3886 ATGCTGGTAATCTTGCCCATTGTGGGGTCCTTCATGTGGATGTTCAGGGACTGGGACTGG 3945 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 |||||||| |||||||| |||||||| | | |||| || | ||| ||||| Sbjct 3946 TCAATGAAAGCACCACGATCAGCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAC 4005 Query 80212 ACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCA 80268 || || |||| |||| | || || || |||| | | | | | || Sbjct 4006 ACGGTCTTGTACAAGGCCTTGATA---TCTTCGGGGATGTTGGGGATGTTCTGAATGGAG 4062 Query 80269 CCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGA 80325 |||| || |||| | || |||| || | ||||| || | | ||| Sbjct 4063 CCGTTCTCAGCAATGATACGGTTCTTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGG 4122 Query 80326 TCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA 80382 || || | ||| | | ||| || | || |||| || || ||| || ||| | Sbjct 4123 TCCTTGAGAAGCCAGGGGTTGACAACCTGGA---ACTCGCCGGCAAGGACACGTCGCTGG 4179 Query 80383 TACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTC 80442 || | ||| | |||||| ||||| || ||||||||| || || ||||| | || || Sbjct 4180 TAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTG 4239 Query 80443 GCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC- 80501 || || ||||| ||| |||| | || || |||| ||||||| |||||| | ||| Sbjct 4240 GCAGTGGGCATGGGGGCGACGAGCAAGCTGTTGCGCACACCGTGCTCCTTGATCTGCTCC 4299 Query 80502 --GCGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCT 80554 | || | || || || || ||| || ||| |||| ||||||||||| | Sbjct 4300 TTGAGCGAGTCCCACTCCCACAAGTCAG----AAGGCT-TGACATCCCACATGTCGAATT 4354 Query 80555 GCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGG 80614 | | ||||||||| || || || || ||| ||||| ||||| || |||||| ||||| Sbjct 4355 GGAGGATGCCCTCGGATGCAGGTGATCCCTTGAACGATTCGTAGGGACCCTCCACCTTGG 4414 Query 80615 CCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA 80674 | | ||| || || ||||||||||| || || |||||||| |||||||| Sbjct 4415 CAATCTCCATGGAAGCCTCCAGGGCCGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCA 4474 Query 80675 CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGC 80734 |||| |||| || || || | || || || | ||| |||| || || | Sbjct 4475 GCTCGCGAGCCTCGGGAGACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGAC 4534 Query 80735 CCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATT 80793 |||| || || | | || || ||||||||| |||| | | || |||||| | | Sbjct 4535 CCTGGACACCAACACCAATAGGTCGGTGGCGCATGTTGCTGTTGC-GAGCCTCCTGGACA 4593 Query 80794 GGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCA 80853 || || |||| ||| |||| ||| |||||||| ||| ||| || || ||| Sbjct 4594 GGATAGTAGTTGACATCAATGATCTTGTTAAGGTTGCGGACAACGACCTTGGTGACTTCA 4653 Query 80854 TGAAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGG 80907 ||||| |||| ||||||| | || ||| | || | || || ||| || Sbjct 4654 TGAAGCTTCTTAAAGTCGTAGCAGCCTTCGTTGTAGTCGACGTAAGCAGGGAGGGCCAAA 4713 Query 80908 GACGCCAGATTGCACACGGCCACCTCTTC---AGCATCTGTAAACTCGACGATTTCCGTG 80964 || |||| ||||||||||| ||||| || ||| | || |||||| ||| || ||| Sbjct 4714 GAGGCCAAGTTGCACACGGCAACCTCATCTGGGGCA-CAGT--ACTCGATGATCTCGGTG 4770 Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 || | || || || || |||||||| || ||||| |||| |||||| Sbjct 4771 CAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGA 4830 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084 ||||||||| |||| | ||| |||| |||||| ||| | | ||||||| | ||| Sbjct 4831 TCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCAC 4890 Query 81085 ATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCT 81144 | || | || || |||||| || || | | ||||| | || Sbjct 4891 AGCTTCTGAGCGCGGATGGTCTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATACAAG 4950 Query 81145 TCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203 | ||||||| | || | | || |||| ||| | || || ||||| |||||||| || Sbjct 4951 GCCTCGAACTCCTCGCCATAGCAG-TCAGCAAGGCCAGGACATTCGTTGGGGCACATGAG 5009 Query 81204 GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGT 81263 |||||| || ||||| ||| ||||||||| ||| || |||||||| || Sbjct 5010 CGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGGTCGGGAATCCAGAGAGCAAG 5069 Query 81264 GAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAG 81321 ||||| |||||| |||||| |||| || | || ||||| ||| | || || || Sbjct 5070 GAACAAGTCGCG--AGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAC 5127 Query 81322 TCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGA 81375 || | || ||| || ||||| ||||| || || | ||| | | || | |||| | Sbjct 5128 TCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAAGCACCAGGACGCTTGTTA 5187 Query 81376 CGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATA 81435 |||||||| | ||| || | |||||| ||| || || || | ||| || || ||| Sbjct 5188 ---CCACCCTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATA 5244 Query 81436 CCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATT 81495 || | || |||||| || || | || || || |||| || | ||| | | Sbjct 5245 CCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGA---TGC-GGTG 5300 Query 81496 GA-----AAGACCGATGCCACCTGACCACTTT-GAAATCTGAGCACACCGGTTCATGGTC 81549 || ||| ||||| ||||| | ||| ||| |||||| ||||| |||| ||| Sbjct 5301 GACGTTCAAG-CCGATACCACCAG-CCATTTTGGAAATCATGGCACATGTCTTCAGGGTG 5358 Query 81550 TCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGA 81609 ||||| || |||||||| ||||| | |||||||| | |||||| || |||| || Sbjct 5359 TCATAGATACCCTCGATACTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCT-- 5416 Query 81610 GGGCTTTTTGAG--CCGGCATTGAACA-GTGTTGGGGTCGCGTGAATGAAATAACGGTTT 81666 |||| | | | ||||| ||||||| | || |||| || || |||| | | | Sbjct 5417 GGGCCTGCGGGGTACCGGCGTTGAACAGGGGTGGGGGAGGCATGGGTGAAGAACTTGCTA 5476 Query 81667 GACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCT 81726 ||||| |||| || || ||| ||| || ||| ||||| || || || | || Sbjct 5477 GACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGAC 5536 Query 81727 ACACGCATAAACATGTACTGGGGC 81750 || ||||||| ||||| ||| ||| Sbjct 5537 ACCCGCATAATCATGTGCTGTGGC 5560 >seq1667 Length=31153 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 22486 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCC 22545 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| |||| || |||||||||||||| |||||||| |||||| Sbjct 22546 GATACCATCGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 22605 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| |||||||||||||||| || || || | ||||| || Sbjct 22606 CAGCGTCTGATTTTTGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 22665 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || ||||| ||||| Sbjct 22666 ATCCAGAAGGAGTCTACCCTCCACCTGGTTCTCCGCCTTCGTGGTGG 22712 Score = 174 bits (192), Expect = 2e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||| | ||||||||||| || || | |||||||||||| Sbjct 23013 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAGTCATCA 23072 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || ||||||||||||||||| || || || || ||| Sbjct 23073 GACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCGGATCAG 23132 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || |||||||||||||| |||||||| | ||| || | ||| ||||| || Sbjct 23133 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGTCGCACTTTGAGC-GACTACAA 23191 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||| ||||| || ||| | ||||| || ||||| Sbjct 23192 CATTCAAAAGGAGAGCACACTTCACCTTGTCCTCCGTCTGCGTGGTGG 23239 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||| ||||| || || || ||||| |||||| ||||| ||||| Sbjct 22797 GTCAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATTGAC 22856 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| || ||||| ||||||||||| | || Sbjct 22857 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGCTTGATC 22916 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| || ||||||| || ||||| | ||||| || | || ||||| Sbjct 22917 TTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATTCAGAAGGAG 22976 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| || || ||| | ||||| || ||||| Sbjct 22977 TCCACTCTCCACCTTGTCCTTCGTCTCCGTGGTGG 23011 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || |||||||| || || || ||||| || || Sbjct 23241 ATGCAGATTTTCGTCAAGACTCTCACAGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 23300 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||||||||||||||| |||||||| |||||| Sbjct 23301 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 23360 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || |||||||||||||| || || || | ||| ||| | ||| ||||| || Sbjct 23361 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGC-GACTACAA 23419 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||| || || | || | |||||||| ||||| || Sbjct 23420 CATCCAGAAGGAGAGCACGCTGCACTTGGTGCTTCGTCTTCGTGGTGGCCA 23470 >seq1790 Length=95376 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 27894 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 27835 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 27834 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 27775 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||||||||| || ||||||| || ||||| | ||||| || Sbjct 27774 CAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTACAAC 27715 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| |||| || || ||||| Sbjct 27714 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 27668 >seq2135 Length=79206 Score = 129 bits (142), Expect = 7e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || |||||||| ||||| || | || Sbjct 76292 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 76351 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| | Sbjct 76352 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 76411 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || |||||||| ||||| |||||||||| || ||||| | ||||| || |||| ||| Sbjct 76412 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAG 76471 Query 27595 G 27595 | Sbjct 76472 G 76472 >seq2023 Length=152745 Score = 91.5 bits (100), Expect = 2e-13 Identities = 173/252 (69%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 32002 CAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTG-TCGAGTGACATGAAGGTGGC 32060 ||||| |||||| | ||||| || |||||| ||| || || || ||| ||||| | Sbjct 20341 CAGCGAAAGGTGCTCTACGCATGTTTCAAGAGAAACGTGGTCAAG-GACGAAAAGGTTGT 20283 Query 32061 GCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCA 32120 | ||||| | || || || | | | || ||||| ||||||||||| || || || || Sbjct 20282 GGAGCTGGCTGGTTATGTCTCTGGACTGACTGCCTACCACCACGGCGAAGCCTCTCTGCA 20223 Query 32121 GGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGA 32180 | ||||| | || || ||| | ||||| || | |||||| | || | || || Sbjct 20222 GCAAACCATCATTGGACTGGCCCAGGATTTTGTGGGATCCAATAACATCAATGTTCTGGA 20163 Query 32181 GCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTA 32240 ||| || | ||||| | || || ||||||||| |||||||| ||| | ||||| Sbjct 20162 GCCCAGCGGTAACTTTGGTTCTCGACTTGCCGGTGGCTCTGATGCTGCCAGCCCTCGTTA 20103 Query 32241 CATCTTCACCCG 32252 | ||| ||||| Sbjct 20102 TACCTTTACCCG 20091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570293611487600