Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq1667 98.7 6e-16
seq1790 89.7 3e-13
>seq1667
Length=31153
Score = 98.7 bits (108), Expect = 6e-16
Identities = 148/206 (72%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTCGCTCGTCTTCAAGTT 34561
|| || |||||||||||||||||||| || || | |||||| || |||| || || |
Sbjct 23215 TGAAGTGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAAAGTG--CGACCGTCCTCGAGCT 23158
Query 34562 GTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCT 34621
| ||||| ||||| || | |||||| || ||||| || | ||||||||||| |||
Sbjct 23157 GCTTACCAGCAAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTC-CTGAATC 23099
Query 34622 TTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCG 34680
|||| || || | || |||||| ||| || |||| || || || || |||
Sbjct 23098 TTTGACTTGACATTGTCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTCTTGCCG 23039
Query 34681 GTTAACGTTTTCACAAAAATCTGCAT 34706
|| ||||| || || || ||||||||
Sbjct 23038 GTCAACGTCTTGACGAAGATCTGCAT 23013
Score = 93.3 bits (102), Expect = 3e-14
Identities = 104/137 (76%), Gaps = 4/137 (3%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--T 34536
||| || | |||||| | |||||| || || ||||||||||| || ||||| || || |
Sbjct 23468 GCCACCACGAAGACGAAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCT 23409
Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596
|| ||| || ||||||| || || ||||| ||||| || || ||||| ||||| ||
Sbjct 23408 CAAGGTG--CGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGA 23351
Query 34597 GGCACTCCCTCCTTGTC 34613
|| | |||||||||||
Sbjct 23350 GGAATGCCCTCCTTGTC 23334
Score = 89.7 bits (98), Expect = 3e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
||||||||| |||||| |||||||| || || || || ||||| | || ||||| ||
Sbjct 22987 TGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGC 22928
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
|| ||||| || || || ||||| ||||| || || | ||||||||||| ||||||
Sbjct 22927 TTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTT 22869
>seq1790
Length=95376
Score = 89.7 bits (98), Expect = 3e-13
Identities = 155/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||| ||||| || |||||| || ||||| || || || || |||||
Sbjct 27677 AGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGG 27736
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || ||||| || || || || ||||| |||||||| || | ||||||
Sbjct 27737 CCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCC 27796
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||||| | || || | || ||||| |||||| || | |||
Sbjct 27797 TTGTCCTGGATCTTG-GACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 27855
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
||||| || || || | || || || ||||||||||| |||
Sbjct 27856 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 27898
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314720566768715
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |