Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1667 98.7 6e-16 seq1790 89.7 3e-13 >seq1667 Length=31153 Score = 98.7 bits (108), Expect = 6e-16 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTCGCTCGTCTTCAAGTT 34561 || || |||||||||||||||||||| || || | |||||| || |||| || || | Sbjct 23215 TGAAGTGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAAAGTG--CGACCGTCCTCGAGCT 23158 Query 34562 GTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCT 34621 | ||||| ||||| || | |||||| || ||||| || | ||||||||||| ||| Sbjct 23157 GCTTACCAGCAAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTC-CTGAATC 23099 Query 34622 TTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCG 34680 |||| || || | || |||||| ||| || |||| || || || || ||| Sbjct 23098 TTTGACTTGACATTGTCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTCTTGCCG 23039 Query 34681 GTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || |||||||| Sbjct 23038 GTCAACGTCTTGACGAAGATCTGCAT 23013 Score = 93.3 bits (102), Expect = 3e-14 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--T 34536 ||| || | |||||| | |||||| || || ||||||||||| || ||||| || || | Sbjct 23468 GCCACCACGAAGACGAAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCT 23409 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 || ||| || ||||||| || || ||||| ||||| || || ||||| ||||| || Sbjct 23408 CAAGGTG--CGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGA 23351 Query 34597 GGCACTCCCTCCTTGTC 34613 || | ||||||||||| Sbjct 23350 GGAATGCCCTCCTTGTC 23334 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||| |||||| |||||||| || || || || ||||| | || ||||| || Sbjct 22987 TGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGC 22928 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || || ||||| ||||| || || | ||||||||||| |||||| Sbjct 22927 TTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTT 22869 >seq1790 Length=95376 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| |||| ||||| || |||||| || ||||| || || || || ||||| Sbjct 27677 AGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGG 27736 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || ||||| || || || || ||||| |||||||| || | |||||| Sbjct 27737 CCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCC 27796 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | || || | || ||||| |||||| || | ||| Sbjct 27797 TTGTCCTGGATCTTG-GACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 27855 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| || || || | || || || ||||||||||| ||| Sbjct 27856 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 27898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314720566768715