Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1458 98.7 9e-16 >seq1458 Length=45513 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| || || || || | |||||||| | || | || ||||||||||| || Sbjct 41032 CTGCCAGCTATACCAGCGCTCCTGCGACATGGGTCTTGGCATCCCCTTCAACATTGCCAG 41091 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754 || || ||||||||| ||||| ||||||| || ||| | | |||| || || ||| Sbjct 41092 CTATGCGCTGCTCACGCACATGCTCGCTCACGT-GTGTGATCTGGTGCC-CGGAAGC-CT 41148 Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 | |||| |||| || || || ||||| | |||||||||| |||| || ||| Sbjct 41149 CACCCACGTCATGGGAGACGCACACGTCTACATCGACCACATCGACGCTCTCCAGACCCA 41208 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTA 34853 |||| | || || || || || |||||| |||| | |||| Sbjct 41209 GCTGGAGCGCGAACCGCGGCCATTCCCCGAGCTGGAGATTA 41249 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 6492 TAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGA 6551 |||| | |||| |||||| || || || || || | ||||||| || |||| |||| Sbjct 41249 TAATCTCCAGCTCGGGGAATGGCCGCGGTTCGCGCTCCAGCTGGGTCTGGAGAGCGTCGA 41190 Query 6552 TGTGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCA- 6608 |||||| | ||||| || || || |||| |||| | ||| || || |||| Sbjct 41189 TGTGGTCGATGTAGACGTGTGCGTCTCCCATGACGTGGGTGAG-GCTTCCG-GGCACCAG 41132 Query 6609 ACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCA 6668 | | ||| || ||||||| ||||| ||||||||| || || || ||||||||||| || | Sbjct 41131 ATCACAC-ACGTGAGCGAGCATGTGCGTGAGCAGCGCATAGCTGGCAATGTTGAAGGGGA 41073 Query 6669 CCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 || | |||||||| | || || || || ||||||||| Sbjct 41072 TGCCAAGACCCATGTCGCAGGAGCGCTGGTATAGCTGGCAG 41032 Score = 89.7 bits (98), Expect = 5e-13 Identities = 128/174 (74%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCG--GGGGTTCC 34379 || || ||||||||||||| | ||||| || || || || ||| |||| || | | Sbjct 40661 GGCGTCAAGATCTGGGACGGCAATGGGTCCCGCGAGTTCCTCGAC-AGCGTCGGCCTGAC 40719 Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439 | | || |||| |||||| ||||||| |||||||| ||||||||| |||||||||| | Sbjct 40720 CCAC-CGCGAGGTCGGCGACCTGGGCCCCGTCTACGGCTTCCAGTGGCGACACTTTGGCG 40778 Query 34440 CGGAGTATCGGGGGAGCGAA-GCGGACTATTCGGGACAGGGAGCGGACCAGCTG 34492 | ||||| || | || || || ||||| | || |||| | ||||||||| Sbjct 40779 CCGAGTA-CGTCGATGCAAAGGCCGACTACGCCGGCAAGGGCGTCGACCAGCTG 40831 Score = 89.7 bits (98), Expect = 5e-13 Identities = 128/174 (74%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC-TTCGCTCCCCCGATACTCCGCCCCAA 6911 ||||||||| | |||| || | ||||| || || || | || ||||| || |||| Sbjct 40831 CAGCTGGTCGACGCCCTTGCCGGCGTAGTCGGCCTTTGCATCGACG-TACTCGGCGCCAA 40773 Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACC 6971 |||||| ||||||||| |||||||| ||||||| |||||| |||| || | || | Sbjct 40772 AGTGTCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACCTCGCG-GTGGGTCAGG 40714 Query 6972 CC--CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 || |||| ||| || || || || ||||| | ||||||||||||| || || Sbjct 40713 CCGACGCT-GTCGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACGCC 40661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448249204275600