Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1667 176 1e-38
seq1790 167 5e-36
seq2135 129 1e-24
>seq1667
Length=31153
Score = 176 bits (194), Expect = 1e-38
Identities = 159/200 (80%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| ||||||||||| || || ||||| || || | ||||| | |||||
Sbjct 22996 AGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCC 22937
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| | ||| || ||||||||||| | || |||||||||
Sbjct 22936 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 22877
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || ||||| ||||| || |||||||| ||||| |||
Sbjct 22876 TGGATCTTGGACTTGACGTTGTCAATGGTATCAGATGACTCCACCTCGAGGGTGATGGTC 22817
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
||||| ||||| ||||| ||
Sbjct 22816 TTTCCGGTGAGGGTCTTGAC 22797
Score = 165 bits (182), Expect = 2e-35
Identities = 172/223 (77%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951
|||||| | || || | ||| || ||| ||| || |||||||| || || | |||||
Sbjct 23462 ACGAAGACGAAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGG- 23404
Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011
| | || |||||||||||||| || || ||||| | ||| || ||||||||||||| |
Sbjct 23403 TGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGC 23344
Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071
| ||||||||||| ||||| || ||||| ||||||||||| || ||| |||||||
Sbjct 23343 CCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGA 23284
Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| ||||| ||||| || ||||||||||| || || | ||||||
Sbjct 23283 GGGTGATTGTCTTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241
Score = 152 bits (168), Expect = 1e-31
Identities = 167/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || ||||| || || ||||| || |||||||| || || | || ||
Sbjct 22707 ACGAAGGCGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 22648
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || || |||||||| || || || || || || ||||||||||||| ||
Sbjct 22647 TCGGCCATCCTCGAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCC 22588
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || ||||| |||||||| || || || ||||||||
Sbjct 22587 CTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTATCGGACGACTCCACCTCGAG 22528
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| || ||||| ||||| || || | |||||
Sbjct 22527 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 22486
Score = 125 bits (138), Expect = 2e-23
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961
|||||||||||||| ||| ||| ||||| ||||| || || | ||| | | | || ||
Sbjct 23224 AGGACAAGGTGAAGTGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAAAG-TGCGACCGTC 23166
Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|| |||||||| || || ||||| || || || || || || || | || ||||||||
Sbjct 23165 CTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTC 23106
Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081
||| |||||| || || || ||||||||||| || |||||||| | ||||| ||
Sbjct 23105 CTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGT 23046
Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || || | ||||| || || | ||||||
Sbjct 23045 CTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 23013
>seq1790
Length=95376
Score = 167 bits (184), Expect = 5e-36
Identities = 166/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || ||||| || |||||||| || || | ||||| | |||||
Sbjct 27683 AGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 27742
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || |||||||| | || || ||||| || |||| || |||||||||
Sbjct 27743 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 27802
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || ||||| || |||||||||
Sbjct 27803 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 27862
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| |||||||| ||||| || || | |||||| ||
Sbjct 27863 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 27897
>seq2135
Length=79206
Score = 129 bits (142), Expect = 1e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | |||||| | ||||| || ||||||||||| || |||||
Sbjct 76470 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 76411
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || || ||||| || |||| || ||||||||||||||||| || || || |||
Sbjct 76410 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 76351
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || ||
Sbjct 76350 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 76292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159117024399575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |