Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1790 154 4e-32
seq1667 143 6e-29
seq2135 116 9e-21
>seq1790
Length=95376
Score = 154 bits (170), Expect = 4e-32
Identities = 169/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| |||||||| || || || || |||| ||||| |||| | ||
Sbjct 27673 ACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 27732
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| ||||| || |||||||| ||||||||||| | ||| || ||||| || ||||| ||
Sbjct 27733 TCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 27792
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| ||| ||||||||||| || | ||||| || |
Sbjct 27793 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 27852
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||||||||| ||||| | || || | ||| | ||||| ||
Sbjct 27853 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 27897
>seq1667
Length=31153
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||||||||| || ||| || ||||| | ||||| ||| |||||| | || ||
Sbjct 23224 AGGACAAGGTGAAGTGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCC 23165
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| || || || || || || || ||||| ||||||||
Sbjct 23164 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCC 23105
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| |||||| ||| ||| |||||||||||||| | || || || || ||||| |||
Sbjct 23104 TGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTC 23045
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || || | ||| | |||||
Sbjct 23044 TTGCCGGTCAACGTCTTGACGAAGATCTGCAT 23013
Score = 123 bits (136), Expect = 6e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||||||||||||||| || || || | ||||| |||| | |||| |||||
Sbjct 22996 AGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCC 22937
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || ||||| || || ||||| ||||||||
Sbjct 22936 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 22877
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || || ||||| || || | ||||| || | ||||| |||
Sbjct 22876 TGGATCTTGGACTTGACGTTGTCAATGGTATCAGATGACTCCACCTCGAGGGTGATGGTC 22817
Query 225682 TTGCCCGT 225689
|| || ||
Sbjct 22816 TTTCCGGT 22809
Score = 122 bits (134), Expect = 2e-22
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| || ||| || || |||| ||||| ||| ||| ||
Sbjct 23462 ACGAAGACGAAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGT 23403
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || ||||| |||||||| ||||| ||||| | || || ||||| || ||||| ||
Sbjct 23402 GCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCC 23343
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| ||| || ||||||||||| || | |||||| || |
Sbjct 23342 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAG 23283
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| || | ||| || | ||| | |||||
Sbjct 23282 GGTGATTGTCTTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241
>seq2135
Length=79206
Score = 116 bits (128), Expect = 9e-21
Identities = 133/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| | || | ||||| || |||||||| ||||| |||||
Sbjct 76470 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 76411
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| ||| || ||||| || ||||| || |||||||| |||||||| ||| ||| |||
Sbjct 76410 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 76351
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|| ||||| |||| || || || | ||||| ||||||||||||| || || | |||
Sbjct 76350 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 76292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192495217234370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |