Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq535 159 3e-34
>seq535
Length=62126
Score = 159 bits (176), Expect = 3e-34
Identities = 557/863 (65%), Gaps = 15/863 (2%)
Strand=Plus/Plus
Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307
|||||| || ||||| |||| || ||||| |||||||| || || ||||| | |
Sbjct 14791 ACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGA 14850
Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367
||||| || ||||| || ||||| || || | | ||||| ||||| |||
Sbjct 14851 GAAATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCGAGA 14910
Query 4368 GCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATT 4427
|| || |||| ||||| || ||||| || || ||||| |||| || | |||| ||
Sbjct 14911 GCGACCAGCAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGCTGGAGTTCATG 14970
Query 4428 CCAATTAATCTCACAGGT-AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486
|||| || | |||| || || | ||||| ||||| || || || || || ||
Sbjct 14971 CCAAGCAAGG-CGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCGTC 15029
Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGT----TTATTTAC-TAAGTATCCAAAC 4541
||||| || || || | || || | ||| || || | | || | ||
Sbjct 15030 GGTGATGATGTCACGGATCATCTCCTT-GCTGGCACGGTTCTTGAGGTGAGAGTGCAGC- 15087
Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601
| || ||||| ||| |||| ||| || || | || || ||||| |||||
Sbjct 15088 ---AGGCAGGCAAAGTCAGTGTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAG 15144
Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661
|| | || ||||| | ||||| ||| || | ||| || || | |||||| | ||
Sbjct 15145 GTCAGACCAGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTG 15204
Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721
||||| ||||| || ||||||||||| || || | || | || || | |||
Sbjct 15205 AAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTG 15264
Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATA 4781
|| | |||||| || | ||||||| || ||||| || ||| ||||| || | ||
Sbjct 15265 TCCTGAATCCACTTGATGGCCCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATG 15324
Query 4782 GCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841
||||| || | | || | || | || || ||||| || || |||
Sbjct 15325 GCGTTGAAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAG 15384
Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901
|| | || || || || || || || ||||| || ||||| ||||||| ||| ||
Sbjct 15385 TAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCG 15444
Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961
| | || || ||| | || | || || | ||| ||||| || || || ||| |
Sbjct 15445 GGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAG 15504
Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTT 5018
|| ||||| || |||| | ||||| || ||||||| |||||| || || ||
Sbjct 15505 GCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTG 15564
Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078
||||||| | ||| ||| || | | ||||| ||||| | ||||| || || || ||
Sbjct 15565 TTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCG 15624
Query 5079 GCTTTTTTGTACATAGACCAAAT 5101
|| ||||||||||| ||||||
Sbjct 15625 GCCTTTTTGTACATTTGCCAAAT 15647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427037343009215
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |