Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq535 159 3e-34 >seq535 Length=62126 Score = 159 bits (176), Expect = 3e-34 Identities = 557/863 (65%), Gaps = 15/863 (2%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| || ||||| |||| || ||||| |||||||| || || ||||| | | Sbjct 14791 ACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGA 14850 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 ||||| || ||||| || ||||| || || | | ||||| ||||| ||| Sbjct 14851 GAAATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCGAGA 14910 Query 4368 GCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATT 4427 || || |||| ||||| || ||||| || || ||||| |||| || | |||| || Sbjct 14911 GCGACCAGCAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGCTGGAGTTCATG 14970 Query 4428 CCAATTAATCTCACAGGT-AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 |||| || | |||| || || | ||||| ||||| || || || || || || Sbjct 14971 CCAAGCAAGG-CGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCGTC 15029 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGT----TTATTTAC-TAAGTATCCAAAC 4541 ||||| || || || | || || | ||| || || | | || | || Sbjct 15030 GGTGATGATGTCACGGATCATCTCCTT-GCTGGCACGGTTCTTGAGGTGAGAGTGCAGC- 15087 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 | || ||||| ||| |||| ||| || || | || || ||||| ||||| Sbjct 15088 ---AGGCAGGCAAAGTCAGTGTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAG 15144 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 || | || ||||| | ||||| ||| || | ||| || || | |||||| | || Sbjct 15145 GTCAGACCAGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTG 15204 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 ||||| ||||| || ||||||||||| || || | || | || || | ||| Sbjct 15205 AAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTG 15264 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATA 4781 || | |||||| || | ||||||| || ||||| || ||| ||||| || | || Sbjct 15265 TCCTGAATCCACTTGATGGCCCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATG 15324 Query 4782 GCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 ||||| || | | || | || | || || ||||| || || ||| Sbjct 15325 GCGTTGAAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAG 15384 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 || | || || || || || || || ||||| || ||||| ||||||| ||| || Sbjct 15385 TAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCG 15444 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 | | || || ||| | || | || || | ||| ||||| || || || ||| | Sbjct 15445 GGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAG 15504 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTT 5018 || ||||| || |||| | ||||| || ||||||| |||||| || || || Sbjct 15505 GCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTG 15564 Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078 ||||||| | ||| ||| || | | ||||| ||||| | ||||| || || || || Sbjct 15565 TTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCG 15624 Query 5079 GCTTTTTTGTACATAGACCAAAT 5101 || ||||||||||| |||||| Sbjct 15625 GCCTTTTTGTACATTTGCCAAAT 15647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427037343009215