Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1903 141 1e-28
>seq1903
Length=20131
Score = 141 bits (156), Expect = 1e-28
Identities = 279/410 (68%), Gaps = 2/410 (0%)
Strand=Plus/Plus
Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTC-ACCATCTTCCTTAACTCGTTTCAT 78013
||||| ||||| || |||||||| | | |||||| | ||||| | ||| || |||||
Sbjct 4984 CCAGGACATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTC-TCAACACGCTTCAT 5042
Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073
||||| || || ||||| ||||||| || | || || | | ||||| || ||
Sbjct 5043 GAAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCC 5102
Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133
||||| ||||| || ||||| | | || | ||||| || || || || ||
Sbjct 5103 GTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGAT 5162
Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193
|| | | | ||||| || || ||||| |||||||| | ||||||||| ||||| || |
Sbjct 5163 GGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAA 5222
Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253
|||| | ||| |||||||||||||| || || || || || |||| ||| ||| ||
Sbjct 5223 CACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCC 5282
Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313
| || || || | | | || || || || ||||| || || || | ||
Sbjct 5283 GGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATTTTGGAAATCATGGC 5342
Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGT 78363
|| |||| || || ||||||||||| ||||| || ||| ||||||
Sbjct 5343 ACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCATGT 5392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694648350687200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |