Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1903 172 8e-38 >seq1903 Length=20131 Score = 172 bits (190), Expect = 8e-38 Identities = 447/677 (66%), Gaps = 11/677 (2%) Strand=Plus/Plus Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTC-ACCATCTTCCTTAACCCGTTTCAT 76608 ||||||||||| || || ||||| | | ||| || | ||||| | ||| || ||||| Sbjct 4984 CCAGGACATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTC-TCAACACGCTTCAT 5042 Query 76609 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCC 76668 ||||| || || ||||| ||||||| || | || || | | ||||| || || Sbjct 5043 GAAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCC 5102 Query 76669 TGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 76728 ||||| ||||| |||||||| | | || | ||||| || || || || || Sbjct 5103 GTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGAT 5162 Query 76729 CGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788 || | | |||| || || || ||||| |||||||| | ||||||||||||||| || | Sbjct 5163 GGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAA 5222 Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848 |||| | ||| |||||||| ||||| || ||||| || || |||| ||| ||| || Sbjct 5223 CACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCC 5282 Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908 ||||| || | | ||| || || || |||||||| || || | || Sbjct 5283 GGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATTTTGGAAATCATGGC 5342 Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAA 76968 ||| |||| ||||||||||| ||||| |||||||| ||| |||||| | | || Sbjct 5343 ACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCATGTCGACCAAGAA 5402 Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACA-ATGTAGGAGATGCATGAG 77027 || |||| || || || || || || |||| || || || ||||| | Sbjct 5403 GCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGGTGGGGGAGGCATGGG 5462 Query 77028 TGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC----CCAT 77083 |||| | || ||| | || |||||||| || | || || || || || Sbjct 5463 TGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCC 5522 Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTA 77143 |||| || |||| || ||||| | ||| ||||| || || || ||| |||| | Sbjct 5523 AGATG----CCAACAGACACCCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCCA 5578 Query 77144 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 77203 | | |||| | |||||| |||| ||| || || ||||| || | ||| ||| Sbjct 5579 TCAAGCTTCAGAAGGTATGACCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAGTTGAAG 5638 Query 77204 TCTCTTTCGTAAATAAT 77220 |||| ||||| | ||| Sbjct 5639 TCTCGATCGTAGACAAT 5655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712913412993600