Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1667 149 2e-30
seq1790 147 5e-30
seq2135 131 4e-25
>seq1667
Length=31153
Score = 149 bits (164), Expect = 2e-30
Identities = 148/189 (78%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||||||||||| || || |||||||||||||||||| || |||
Sbjct 23244 CAGATTTTCGTCAAGACTCTCACAGGCAAGACAATCACCCTCGAGGTGGAATCTTCCGAC 23303
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| |||||||||||||| || || || ||||| ||||||||
Sbjct 23304 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 23363
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | ||||| || || || ||||| ||||| || | || |||| ||| || ||| |
Sbjct 23364 CGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCAC-CTTGAGCGACTACAACAT 23422
Query 178103 CCAAAAAGA 178111
||| || ||
Sbjct 23423 CCAGAAGGA 23431
Score = 143 bits (158), Expect = 6e-29
Identities = 156/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||| || || || ||||||||||||||||| || ||
Sbjct 22489 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGAT 22548
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || || ||||| ||||||||
Sbjct 22549 ACCATCGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 22608
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || || || || ||||| ||||| | ||||| |||| || ||| ||
Sbjct 22609 CGTCTGATTTTTGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAACATC 22668
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || || || || || || || |||
Sbjct 22669 CAGAAGGAGTCTACCCTCCACCTGGTT 22695
Score = 143 bits (158), Expect = 6e-29
Identities = 151/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| ||||| || ||||||||||||||||| || || ||||| |
Sbjct 22795 TCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATTG 22854
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| |||||||| ||||| |||||||| || || |||||||| |||||||| || | |
Sbjct 22855 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGCTTGA 22914
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
|||||||||| || ||||| || ||||| | || || |||| || ||| | || || |
Sbjct 22915 TCTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATTCAGAAGG 22974
Query 178111 AATCAACACTGCATCTTGT 178129
| || || || || |||||
Sbjct 22975 AGTCCACTCTCCACCTTGT 22993
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || || ||||| | ||||| || ||||||
Sbjct 23016 CAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAGTCATCAGAC 23075
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||||||||||||| || || ||||| ||||| |||||
Sbjct 23076 ACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCGGATCAGCAG 23135
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || || |||||||| || || | ||| | ||| || ||| |
Sbjct 23136 CGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGTCGCACTTTGAGCGACTACAACATT 23195
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
||||| || ||||| || |||||
Sbjct 23196 CAAAAGGAGAGCACACTTCACCTTGT 23221
>seq1790
Length=95376
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 27891 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 27832
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || || || |||||||||||
Sbjct 27831 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 27772
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | |||||||| || || ||||| || ||||| | || || |||| || ||| ||
Sbjct 27771 CGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTACAACATC 27712
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 27711 CAGAAGGAGTCTACCCTCCACCTGGT 27686
>seq2135
Length=79206
Score = 131 bits (144), Expect = 4e-25
Identities = 137/180 (76%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || |||||||| ||||| || ||| ||||| ||
Sbjct 76291 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGAT 76350
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || || || ||||||||||| ||| |
Sbjct 76351 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATT 76410
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||| || || || |||||||| ||||| | || ||| |||| || ||| |||| ||
Sbjct 76411 GATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAA 76470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203694879291870
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |