Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq86 141 1e-28 >seq86 Length=1711676 Score = 141 bits (156), Expect = 1e-28 Identities = 361/544 (66%), Gaps = 19/544 (3%) Strand=Plus/Minus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | ||| || ||||| ||||| |||| |||||||| ||||| ||| Sbjct 1358348 CCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCTCGCTTC 1358289 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || | ||| || | || ||||| || |||||||| | ||||| Sbjct 1358288 TTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACAGCGGCAAAG 1358229 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164 || | | || | ||| | | || || |||| | |||||| | |||| ||| Sbjct 1358228 GCAACGAGGCGCTGGGCAAAGGACGAGTTCTTGTCCTGGATCCATCGAATCGCCCAGTCG 1358169 Query 17165 GCTTT-TTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA----TAATTTCTCTTTTT 17219 || || |||| |||||| || || || ||||| || || || || | || Sbjct 1358168 GCCTTCTTGCGA-ATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCGCTGG-- 1358112 Query 17220 CCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCT 17279 |||| | || | || || || |||||||| ||| |||| | |||||||| ||||||| Sbjct 1358111 -CTGT-GCTCCTTGATGTAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGTGGATGTTCT 1358054 Query 17280 CCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGA 17339 |||| ||||| || ||||| ||||| || || || | || || || || || || Sbjct 1358053 CCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGGACCTCGCCGCTGA 1357994 Query 17340 ATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATAT 17399 | || || | || || ||||| || |||||||| |||||||| || |||| || | Sbjct 1357993 AGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCGAAGAAGGCCAGGATGT 1357934 Query 17400 GCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG------CCAGTCCTTTAAATCTT 17453 | ||||| || || ||||| | || ||| |||||| | | || | Sbjct 1357933 GAGAGATGAAGTACTTCTCGTCATCGTTCAG---GCGGTTGTTCCAGTCGTGCAGGTCCT 1357877 Query 17454 TGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCC 17513 |||| | || | ||||||| |||||| || |||| | |||||||| ||||| | || Sbjct 1357876 TGGACAGGTCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATTTGCC 1357817 Query 17514 AAAT 17517 | || Sbjct 1357816 AGAT 1357813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544519623560