Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq140 268 1e-66 >seq140 Length=1272624 Score = 268 bits (296), Expect = 1e-66 Identities = 549/821 (67%), Gaps = 80/821 (10%) Strand=Plus/Minus Query 145516 TCCTTCCCCTCTCCCCCCAATTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGG 145575 |||| || ||| | ||| ||||||| | ||| | |||||| || | | |||||||| | Sbjct 1078545 TCCTCCCTCTCACAGCCCGATTAGACGGACATGTTCATGGGAATCGACTTGTGGGGGTCG 1078486 Query 145576 TAGCCCTCCAGCGCAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGG 145635 || |||| | |||||||||| || | || |||| ||| | || ||| || | Sbjct 1078485 TATCCCTTGACGACAAAGTCCTCGACCTTCCAGCCATCGATG-CTGCCGCCCTTTTCCCG 1078427 Query 145636 ----ATCCTGAGCCTGGGAAAGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCT 145690 ||| ||| ||| || ||||| || ||| | || ||||| || ||||| || Sbjct 1078426 CGCAATCTCCAGCTCGGGGAACGGCCGCGG-CTCGCGCTCGAGCTGTGTCTGCAGGGCCT 1078368 Query 145691 CCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGA 145750 | | ||||| || ||||||||||||||| |||| ||||||| ||| | ||| ||| | | Sbjct 1078367 CGATGTGGTCGATGTAGACGTGCGCGTCTCCCATGACGTGGGTGAGGCTCCCCGGCACCA 1078308 Query 145751 GGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCA 145810 | | | |||||||| ||||| || ||||| | |||||| || ||||||||||| | Sbjct 1078307 GATCGCACACGTGGGCGAGCATGTGCGTGAGCAGCGCGTAGCTCGCAATGTTGAAGGGGA 1078248 Query 145811 CCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAG------------------- 145851 || ||||||||||| | || |||||||| ||||||||| Sbjct 1078247 TGCCGAGCCCCATGTCGCAGGACCGCTGGTAGAGCTGGCAGTGGAGGTGACCCTTTGGCT 1078188 Query 145852 -----------GAGAGCTCC------------CCGC-----CCGCC----------ACGT 145873 ||| ||||| |||| | ||| |||| Sbjct 1078187 TGTTCTCCTCCGAGGGCTCCGGGGCGTCGACGCCGCGGCCGCGGCCCGGGTACGAGACGT 1078128 Query 145874 AGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCC 145933 |||||||| | | |||||||||||| |||||||| | | ||| |||||||| Sbjct 1078127 AGAACTGGGCGAACATGTGGCAGGGCGGGAGGGCCATCTTGTTGAAGTCGCGCGGGTTCC 1078068 Query 145934 AGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCT------CTTGATCTCCCCTATCA 145987 | ||| |||| | | || |||| | ||||| | |||| | | ||| Sbjct 1078067 ACGCGCTGAGTATCATCCGCCTGTCATACGGGTTGGTGCGCAGCTTG---TGGACGATCT 1078011 Query 145988 GGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGG 146047 | || |||||||| ||||||| || ||| || || |||| ||| |||||| ||| Sbjct 1078010 CGGCC---AGCTGGTCGACGCCCTTGCCGGCGTAGTCGGTGTTGGCGTCGACGTACTCGG 1077954 Query 146048 CCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCC 146107 | || ||||||| ||||||||| ||||||||||| |||||||| ||| || | |||| Sbjct 1077953 CGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGCG 1077894 Query 146108 CCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC-- 146165 |||| ||| | | | ||||||| || ||||| |||||| ||||||||||||||||||| Sbjct 1077893 CCAGGCCGACGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGA 1077834 Query 146166 CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAG 146225 | |||| ||| | | ||||| ||| ||| |||||||||||| ||||| ||| Sbjct 1077833 CGTCGCTGAGGG--CCTTGGACGAGGTGTTGCCCTCGATGAACCAGAGGAGCTCGGCGAC 1077776 Query 146226 GACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 ||| | | |||||| | ||| ||||| || ||||||| Sbjct 1077775 GACGGCGCGGAGGAAGACGCGCTTCGTGGTGAGGAGGGGGA 1077735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590075568214680