Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq86 389 4e-103 seq140 149 6e-31 seq162 120 3e-22 >seq86 Length=1711676 Score = 389 bits (430), Expect = 4e-103 Identities = 576/808 (71%), Gaps = 15/808 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||||||||| || |||||||||| ||| ||| | |||||| Sbjct 1357813 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGACCTG 1357872 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||||||| | ||| ||||||| ||||| | |||||| Sbjct 1357873 TCCAAGGACCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCTCT 1357932 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||||||| ||||||||| |||||||| ||||||||||| ||||||||||| Sbjct 1357933 CACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAGCGC 1357992 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | ||||||| || |||||||||||||| |||||| ||| Sbjct 1357993 TTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 1358052 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 |||||| | ||||| || | ||| || ||||||||||| ||| | | || | Sbjct 1358053 GAGAACATCCACTCCGAGACGTACTCCCTGCTCATCGACACTTACATCAAGGAGCAC--A 1358110 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | | | || | | || |||||||| ||||| || || ||| | ||||||| Sbjct 1358111 GCCAGCGCAACTAC--CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGC 1358168 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGG 117047 ||| |||||| | || |||||| | || ||| || |||| | | ||||||| || | Sbjct 1358169 CGACTGGGCGATTCGATGGATC-CAGGACAAGAACTCGTCCTTTGCCCAGCGCCTCGTTG 1358227 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||| || || ||||||||| ||||||| || || ||| |||| || ||||||| Sbjct 1358228 CCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCA 1358287 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || ||||||||||||||||| || ||||||||||||||| | ||||||| Sbjct 1358288 AGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGG 1358347 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 ||||||| ||||||||||| ||||| | || || | | || | ||| || Sbjct 1358348 GTCTGCACACGGACTTTGCCTGCCTGCTGCACTCTCACCTGAAGAACCGCGCCAGCAAGG 1358407 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | | | || ||| |||||||||| ||| |||||||||| || | ||||| | Sbjct 1358408 AGGTGATTCGTGACATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTTTTGACCGAGG 1358467 Query 117288 CGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | ||||| |||| |||||||| | || | | | ||| ||| ||||| ||||| Sbjct 1358468 CTCTGCC-TTGCGCCCTGCTGGGCATGAACTCCAACCTCATGAAGCAGTACATTGAGTTT 1358526 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 || |||||| | |||||| | | || | | | ||| ||||| || ||||||| Sbjct 1358527 GTTGCCGACCGCCTGCTGGTTGCCCTCGGCAATGAGAAGGTGTACAAGTCGTCCAACCCC 1358586 Query 117407 CTGGACTTTATGAACCTCATCTCCTTGG 117434 | ||||||||| | ||| ||| ||| Sbjct 1358587 TTTGACTTTATGGAGAACATTTCCCTGG 1358614 >seq140 Length=1272624 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 73074 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 73015 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| |||| Sbjct 73014 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 72956 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| || ||||| ||||| || || | |||||||| | |||||| Sbjct 72955 CCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 72896 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| ||| || || || || ||||| || | || || Sbjct 72895 CAACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 72845 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | || Sbjct 763528 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 763469 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | ||||| |||||||| ||| | |||||| Sbjct 763468 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 763409 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || ||||| || || | || |||||| |||||||||| Sbjct 763408 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAAC 763349 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 763348 ATCCAGAAGGAGTCTACCCTTCACCTGGT 763320 Score = 123 bits (136), Expect = 3e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || || || ||||| || ||||| |||| || || || | |||| | | Sbjct 763232 TCGTCAAGACCCTGACCGGCAAGACGATCACTCTCGAGGTTGAGTCCTCTGACACCATCG 763173 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | ||||| ||||||||||| |||||||||| || ||| Sbjct 763172 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTC 763114 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || |||| || |||||| |||||||||||| |||||| Sbjct 763113 ATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATTCAGAAG 763054 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| | || || || || || Sbjct 763053 GAGTCTACACTCCACCTTGT 763034 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || ||||| | | Sbjct 763014 ATGCAGATTTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCGAGTCATCT 762955 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| || |||| ||||| ||||| || || | ||||| Sbjct 762954 GATACTATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCAGACCA 762896 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| || || |||||||| |||| ||||| || | ||||||||| Sbjct 762895 GCAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGCGACTACAA 762836 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| ||| ||||| Sbjct 762835 CATTCAGAAGGAGAGCACCCTGCA 762812 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || ||||| || || || ||| | || || ||| | | Sbjct 762786 ATGCAGATCTTTGTCAAGACACTGACGGGTAAGACGATTACCCTGGAAGTGGAATCATCT 762727 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || |||| ||||| ||||| ||||| | ||||| Sbjct 762726 GATACCATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 762668 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | || || || |||||||| |||| || ||||| | ||||||||| Sbjct 762667 GCAGCGCTTGATTTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGAGCGACTACAA 762608 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| ||| ||||| || || Sbjct 762607 CATCCAGAAGGAGAGCACTCTGCACCTGGT 762578 >seq162 Length=142150 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || |||||| | Sbjct 93639 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 93698 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| ||| | Sbjct 93699 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 93758 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | || ||||| ||||||||||||||||||| Sbjct 93759 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAAG 93818 Query 40879 G 40879 | Sbjct 93819 G 93819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218124479920