Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq140 136 3e-27 seq162 93.3 4e-14 >seq140 Length=1272624 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | |||||||| || || |||||||| ||| | || || |||||| Sbjct 763320 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCA 763379 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| |||||||||||||||| || || || |||||||||||||| Sbjct 763380 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGG 763439 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||||||||||| ||| | || ||| Sbjct 763440 ATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 763499 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || || ||||||||| Sbjct 763500 CCGGTGAGGGTCTTGACGAAGATCTGCATG 763529 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||||||||| || ||||||||||| ||| | || || ||||| ||||| Sbjct 763039 GTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTG 763098 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||||||||||||||| || ||||| |||||||||||||| || || Sbjct 763099 CTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 763158 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | | ||| ||||||| || | ||| |||||||| Sbjct 763159 GGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATCGTCTTGCCGGT 763218 Query 118715 CAGAGTTTTTAC 118726 ||| || || || Sbjct 763219 CAGGGTCTTGAC 763230 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||| || || |||||||| ||||||| ||||| ||||||| Sbjct 72863 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 72922 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || |||||||| || || || |||||||||||||| Sbjct 72923 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 72982 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | ||| || Sbjct 72983 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 73042 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 73043 CCCGTGAGGGTCTTGACGAAAATCTGCAT 73071 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||| || ||||||||||| ||||||| |||||| || || Sbjct 762806 ACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCC 762865 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | || || |||||||| || ||||| || ||||||||||| | Sbjct 762866 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTGA 762925 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| || || | ||||||||| | ||| | || || Sbjct 762926 ATCTTGGACTTGACGTTGTCGATAGTATCAGATGACTCGACCTCCAGGGTGATGGTCTTT 762985 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 762986 CCTGTGAGGGTCTTGACGAAAATCTGCAT 763014 >seq162 Length=142150 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || || || |||||||||||| || |||||| |||| Sbjct 93817 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 93758 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || |||||||||||||| || || || || | ||| Sbjct 93757 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 93698 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | ||||| | | ||||||||| | ||| | || ||||| ||||| || || || || Sbjct 93697 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 93639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829517019564