Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq86 149 1e-30 seq138 122 2e-22 >seq86 Length=1711676 Score = 149 bits (164), Expect = 1e-30 Identities = 299/440 (68%), Gaps = 9/440 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || || || || |||||||| || ||||| || || ||||| |||||| Sbjct 1358224 GTTGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 1358283 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||| || || |||| ||||| ||| |||| ||| | ||| Sbjct 1358284 CTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGAC 1358343 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC--- 102094 || ||||| || |||||||| ||| ||||| | || || ||| Sbjct 1358344 GAGGGTCTGCACACGGACTTTGCCTGCCTGCTG----CACTCTCACCTGAAGA-ACCGCG 1358398 Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 ||| |||| || ||||| ||| || |||| || |||||||| || || || || ||| Sbjct 1358399 CCAGCAAG-GAGGTGATTCGTGACATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTT 1358457 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 | || | | |||||| | |||| ||||||| ||| | |||| |||||| Sbjct 1358458 TTGACCGAGGCTCTGCCTTGCGCCCTGCTGGGCATGAACTCCAACCTCATGAAGCAGTAC 1358517 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274 ||||| ||||| || || || |||||| | || || ||| || || Sbjct 1358518 ATTGAGTTTGTTGCCGACCGCCTGCTGGTTGCCCTCGGCAATGAGAAGGTGTACAAGTCG 1358577 Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334 |||||||||| || ||||| || |||||||| | ||||||||||| || || Sbjct 1358578 TCCAACCCCTTTGACTTTATGGAGAACATTTCCCTGGGCGGCAAGACCAACTTCTTCGAG 1358637 Query 102335 AAGAGAGTCGCCGAGTATCA 102354 ||| | |||||||| || || Sbjct 1358638 AAGCGCGTCGCCGACTACCA 1358657 >seq138 Length=1076999 Score = 122 bits (134), Expect = 2e-22 Identities = 181/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| || ||||| |||||||||| || || | ||| ||||| ||||| |||||| Sbjct 836400 CCGATACCACCAGCCATCTTGGAGATCATGGCACACGTCTTCAGAGTGTCATAGATACCC 836341 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTT 94905 |||||||| ||||| | | | ||| | |||||| ||||| || |||| | || Sbjct 836340 TCAATGCTGTCATCCTTCATGTCCACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTA 836281 Query 94906 CCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATAT 94965 ||| ||| || || || ||||| || ||||| || | | || |||||||| | ||| Sbjct 836280 CCAGCATTGAAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTGGTAT 836221 Query 94966 GTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATG 95025 || || | |||| | ||||| ||| ||||| || ||||| ||||| |||||| Sbjct 836220 GTCTCGAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATGATCATG 836161 Query 95026 TCCTGAGGGCGCTCAAC 95042 | ||| || ||||| || Sbjct 836160 TGCTGTGGCCGCTCGAC 836144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989581882599485